Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02952 ATGGAAATGATGACAAAGAAAGAAGAGAACATGAAGAGGAGTTGGATGTCAATGCCACAAAGTGAGTTCCAAGTAGCAGCAAGGGGTAACAAGAGGAGAAGGAGAGAGCTTACTGCAGTTGCACTAACAAATGAAGAAAACCAAAGTAAGGAACAAACATTGCAGCCACACCAACAGCAACAGAAGGTTGATCAAAATTCCACTACCAACACTACAAAGAGAAGTTCAAGATTCAGGGGTGTCAGCAGACATAGATGGACAGGTCGATACGAGGCTCACTTATGGGACAAGCTCTCTTGGAACATAACACAAAGGAAGAAAGGGAAGCAAGGGGCATATGATGAAGAAGAATCTGCTGCTAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTTCCGATATCAGATTATGAGAAAGAGATTGAGATAATGCAAACTATGACAAAAGAAGAGTACTTGGCTACTCTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGCACCCAAGAAGAAGCTGCTCGTGCTTATGACATAGCAGCCATCGAGTATAGAGGGATCCATGCTGTAACCAACTTTGATTTGAGTTCTTACATACGGTGGTTAAAGCCTTCAGGGGGGAACATCTCAGAATTAAAACAGGAATCAGAGGTAACGCCAGAGTCTCAGACAGTGGTATCTCAAACTCATTCACCAATAGAGGGGTCTAAATCCTTGGCCGTTCATACATTTAGTCCAGATTATCTCGATTTACCTCAAAATCATGAAATCTTTGAAAACAAAACATTCCAATTCTCCAGCAATAAGTCATCTTCTCCAACCGCACTCAGCCTCCTCCTCCGATCATCGATATTTAGAGAATTGGTTGAAAAGAATTTGAACATGTGTGGAGATGAAACTGATGGGGAAGACAAAAAGGATCAACGCCCACAGATAACTAGTGATGATGAGTTGGGTGGGATCTTTTACGATGGAATTAGCAATCTCCCTTATCTGTGA 1014 0.4181 MEMMTKKEENMKRSWMSMPQSEFQVAARGNKRRRRELTAVALTNEENQSKEQTLQPHQQQQKVDQNSTTNTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGTQEEAARAYDIAAIEYRGIHAVTNFDLSSYIRWLKPSGGNISELKQESEVTPESQTVVSQTHSPIEGSKSLAVHTFSPDYLDLPQNHEIFENKTFQFSSNKSSSPTALSLLLRSSIFRELVEKNLNMCGDETDGEDKKDQRPQITSDDELGGIFYDGISNLPYL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02952 337 ProSiteProfiles AP2/ERF domain profile. 129 199 IPR001471 GO:0003700|GO:0006355
Aip10g02952 337 ProSiteProfiles AP2/ERF domain profile. 77 140 IPR001471 GO:0003700|GO:0006355
Aip10g02952 337 MobiDBLite consensus disorder prediction 301 322 - -
Aip10g02952 337 Pfam AP2 domain 76 132 IPR001471 GO:0003700|GO:0006355
Aip10g02952 337 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Aip10g02952 337 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Aip10g02952 337 MobiDBLite consensus disorder prediction 301 318 - -
Aip10g02952 337 SMART rav1_2 164 205 IPR001471 GO:0003700|GO:0006355
Aip10g02952 337 SMART rav1_2 77 146 IPR001471 GO:0003700|GO:0006355
Aip10g02952 337 MobiDBLite consensus disorder prediction 41 76 - -
Aip10g02952 337 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 173 - -
Aip10g02952 337 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 173 332 - -
Aip10g02952 337 SUPERFAMILY DNA-binding domain 173 201 IPR016177 GO:0003677
Aip10g02952 337 SUPERFAMILY DNA-binding domain 76 142 IPR016177 GO:0003677
Aip10g02952 337 Gene3D AP2/ERF domain 76 142 IPR036955 GO:0003700|GO:0006355
Aip10g02952 337 Gene3D AP2/ERF domain 144 201 IPR036955 GO:0003700|GO:0006355
Aip10g02952 337 MobiDBLite consensus disorder prediction 1 81 - -
Aip10g02952 337 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 173 - -
Aip10g02952 337 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 173 332 - -
Aip10g02952 337 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02952 Aip-Chr10 125138573 125140482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02952 73 203 AP2-EREBP Transcription Factor Family AT5G17430 55.030 4.36e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g02952 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02952 - - ahf:112716370 640.573