Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02949 ATGGCGGGAAGTGCAACTAACAAGGTTACATTTGTTTTCTTGGCTACTTTGGCCATTGTTGTTCGATGCATTGAAGCTGGTGGGAATGTGGTGTTTGATGATCATCTCAGAGAACAAGAGAGGATTGCTTATGAACTTGCCCTCAAAACTTACGTCCCAGACCCTTTGGAAGTTACATTCGAACTCAACCATCATGTTAACTTATTCATGAACAAAACTGAATCAAGAAGGAATCTGATGAAGATAAAGAGAAGGAACAGACGTTTTATCTGTGAAGCCACCAACCCCATAGACGGTTGCTGGAGGTGCGATCCCAATTGGGCCAGAAACCGCTTCAGGCTGGCGGATTGCGCAAAGGGATTCGGAAGAAGAGCCAAGGGAGGCTTAGGCGGCCCAATCTACGTTGTCACTGACGAATCCGACGACGACATGATAAACCCTAGACCCGGAACCCTAAGATACGGAGTCCTCCTGAGGGGACCAGTGTGGATCATATTTGCAAGAAGCATGTTGATCAACTTGAAGCAAGAGTTGATCGTGACCTCCGACAAGACCATCGACGGGCGCGGCGCCAACATTCAGATCAGGGGCGGCGCCGGGCTAACGTTGCAGTTCGTGAACAATGTTATCATTCATGGGATTCGCATCAAGGGAGTGAGGTCCAGATCTGGTGGTATGATAAGGTCAAGTGCAGATCATATTGGTCTAAGGATGAGGAGTGATGGTGATGGCATCACCATCTTTGGGTCAAGCAACGTTTGGATCGATCATATCTCCATGTCTGACTGCGAAGATGGCCTCATCGATGTTGTTGCCGGTTCCACTGGCATCACCATCTCAAATTGCCATATGACCAAACACAACGATGTGATGTTGTTTGGAGCTGATGACAGATACACAAGGGACAAGATAATGCAAGTGACGGTGGTATTCAACCACTTCGGACAAGGATTGATTCAAAGGATGCCGAGGTGCAGATTCGGATTCTTCCATGTTCTTAACAACGACTACACCCACTGGATCATGTACGCCATTGGAGGAAGCTCAAACCCAACAATTCTAAGCCAGGGCAACCGCTTCATCGCTCCGAACAACATGGCGGCCAAGGAGGTCACCCACCGCGACTACGCCAGGCCCGAGGAGTGGGCCAACTGGCAGTGGCGCTCGGAGAATGACCTCTTCATGAACAACGCCAGGTTTGTTGAGTCTGGAGCTCCAATTACCAATCTACCCTTCAGGGGGTTCCTCATGACCCCTCGACATGGTTCTCATGCTAACAGACTCACTAGTTATGCTGGTGCTCTTACTTGCGTTGTTGGCAGGCCTTGCTAG 1332 0.494 MAGSATNKVTFVFLATLAIVVRCIEAGGNVVFDDHLREQERIAYELALKTYVPDPLEVTFELNHHVNLFMNKTESRRNLMKIKRRNRRFICEATNPIDGCWRCDPNWARNRFRLADCAKGFGRRAKGGLGGPIYVVTDESDDDMINPRPGTLRYGVLLRGPVWIIFARSMLINLKQELIVTSDKTIDGRGANIQIRGGAGLTLQFVNNVIIHGIRIKGVRSRSGGMIRSSADHIGLRMRSDGDGITIFGSSNVWIDHISMSDCEDGLIDVVAGSTGITISNCHMTKHNDVMLFGADDRYTRDKIMQVTVVFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWIMYAIGGSSNPTILSQGNRFIAPNNMAAKEVTHRDYARPEEWANWQWRSENDLFMNNARFVESGAPITNLPFRGFLMTPRHGSHANRLTSYAGALTCVVGRPC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02949 443 Pfam Pectate lyase, N terminus 32 79 IPR007524 GO:0030570
Aip10g02949 443 SMART amb_all 169 366 IPR002022 -
Aip10g02949 443 PANTHER PECTATE LYASE 6 443 - -
Aip10g02949 443 Gene3D - 94 436 IPR012334 -
Aip10g02949 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Aip10g02949 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Aip10g02949 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Aip10g02949 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Aip10g02949 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Aip10g02949 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Aip10g02949 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Aip10g02949 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Aip10g02949 443 Pfam Pectate lyase 176 360 IPR002022 -
Aip10g02949 443 SUPERFAMILY Pectin lyase-like 85 437 IPR011050 -
Aip10g02949 443 PANTHER PECTATE LYASE 18-RELATED 6 443 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02949 Aip-Chr10 125092826 125097154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02949 11 443 Polysaccharide Lyase AT1G14420 54.688 1.19e-176 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02949 K01728 - gmx:100810615 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02059 01 110787194 110790019 Aip10g02949 10 125092826 125097154 ECH
Aip03g04230 03 126534008 126535975 Aip10g02949 10 125092826 125097154 ECH
Aip10g02949 10 125092826 125097154 Aip10g02949 10 125092826 125097154 ECH