Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02938 ATGGAGGAGGAAGAAGGAGGCGAATGTTGTTGCAATCGTTTGTGGTGTTGTGTGCGCTGGTTGGTCGATGTTGTTGCAACCATTTGTGGTGTCGATTTAGACCGCATCGGCGGCGATAAGGATGGCGACGACGATGCCGATGCGGCCATCGGAGTGGGGAACGCGGTCGGCTATGAAAACATCATCACTATGTCATGGCCTTCAGAAATAAAAAGCAATATTAATAACAAGGGAGGTGCAAACAAGGCTTGTGCTGCTTGCAAATTCCAAAGACGAAGGTGCACTAAGGATTGCATTCTCTCCCCTTATTTCCCATCAGATAAACCTACAACATTCACCAACGCACATCGTTTGTTTGGTGTTTGCAACATGACGAGGATTCTCAGCAAGATCAAACCAGAACAGCGGGATGAGTGCATGAAATCAATTATATTCGAGTCCGATATGCGTGCACAGTTTCCAGTAGAGGGTTGTTTAGGTATCATTCGTCGCTATAAAGATGATCTAGCCAAGGTCAATGCCGAGTTACACTATGTGCAGAGGTGGATCGCTTATTTCAAACAACAAGAACAATACCACCTACAGCAACAGCAGCAACAACAACAATATCTTTCTCTACCATTAATTCTGACACCAGATCAGCCATACAATCAAAGGAAAGATGACTGCACCAACATTGTTGCTCTTCCCGGTATTGGTGTTGGTGTTGGTGTTAATGATAATAATGTTCAGAAAGAAAATTCCAATGAAAAACTCGATTCGAAACTTGGAGCATTGTCGATGTGCGAACAATTTGTGGATTTAAAACCGTCAAAAGATAAATTAGGTGAATGCAGTGCTTATTCTTGTCAGCAAGTTGAAAATCAAGTTCATGCAAATCAGATGGATCTGGAGTCTGATCGGAGACTATTAAAGTTTTCTCCACAAAACAATACTATTGACTACAAACACAAGGATGGAGAGTACTGTGTATCAAAGATGAATAACACAAAAAATGACCATGATGTCAAGCTAGCTAGATACTCAGCCATCTCTATACATGCAACAAACAACAACATTCAGAATTGCTGTGCAAAGAAGTCGTTAACTGATGTTTAA 1098 0.4162 MEEEEGGECCCNRLWCCVRWLVDVVATICGVDLDRIGGDKDGDDDADAAIGVGNAVGYENIITMSWPSEIKSNINNKGGANKACAACKFQRRRCTKDCILSPYFPSDKPTTFTNAHRLFGVCNMTRILSKIKPEQRDECMKSIIFESDMRAQFPVEGCLGIIRRYKDDLAKVNAELHYVQRWIAYFKQQEQYHLQQQQQQQQYLSLPLILTPDQPYNQRKDDCTNIVALPGIGVGVGVNDNNVQKENSNEKLDSKLGALSMCEQFVDLKPSKDKLGECSAYSCQQVENQVHANQMDLESDRRLLKFSPQNNTIDYKHKDGEYCVSKMNNTKNDHDVKLARYSAISIHATNNNIQNCCAKKSLTDV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02938 365 Pfam Lateral organ boundaries (LOB) domain 83 180 IPR004883 -
Aip10g02938 365 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 80 251 - -
Aip10g02938 365 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 80 251 - -
Aip10g02938 365 ProSiteProfiles LOB domain profile. 82 183 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02938 Aip-Chr10 124687564 124689395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02938 82 205 AS2 family AT3G13850 44.531 1.55e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip10g02938 LOB 2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02938 - - aip:107621446 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02024 01 108418075 108419098 Aip10g02938 10 124687564 124689395 ECH
Aip10g02938 10 124687564 124689395 Aip10g02938 10 124687564 124689395 ECH