Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02933 ATGTCAGAAATGGCAAGCAAGCTGCACCTGAAGAAGGAGCTTACCCAAATTCGGAAAGCAGCTCGTGTCTTGAGGGATCCTGGCACCACTTCTTCATGGAAGTCACCACTCAACTCCTCAAGATCTGCATCTGTATCTGCATGGAATTCTGCCTTCAACAACGTCCATGGCCCCACCACAACCACAAAGTTCACTTCCCATTCTCAACTTGACTCTCACGTGAACTCTGTGCCACCTACCACCAACAAGAGGGTCTTCTTGTACAATTGGAAGACCCATAAATCTTCCAGCGACAAGAATGACCGAGACCAAGACGAAGAAGAGGAAGAAGATGCTGCCATTGATGGATCTTCTTCTCTTCTAGGCAGTTTTGAGGACACCTTGAGTGATGCTCACAATGCCTGTGATTCTAAGAGCGACACATACTTAGGCACCGGAGGAGGTGGCCCTCGGTCTTCTTCCATCTTTCGATGTGGAGACACCAATCTTATCTCCTTGGCCACACCCTCTGCCAGAAGAACAGCGCCTCCTAAGAAAAAGAGTAAAAAACCTAACAGCAACACCCTTTCCCATTTGGATCCCATGGCAAAGTTTCAGCATAGAGATACAAATCTCAATCTAGGTAGAAAAGTTTTCAAGTCCAATAATGCATTGTTGGAGGGGCTTCCTCCCATGCCCTTTACCAGGGATGACTCTATTGACCACTCTGATGACACCGAAGACTACTCTAATTCTGAAGATGTGAGACAGGCTTCGGGTTCTGCCACATCCCCTTTGCTCCTCAAACTCAAGCGCAAGAATTGGTCTCGATCTTCCTCAAAGTTATTGCGAACAAGCCGAAAGGAAGACTCCTCTTATTCCTACAGTACTCCTGCATTGTCAACCAGTTCTTACAATAGGTATGGACGCCAATATCCCAGCACTGTTGGCTCTTGGGATGGTACCACAACCTCAATGAACGATGGTGACGATGAGATAGATGATCGGTTGGATTTGCCTGGCCGACAAGGATGTGGAATTCCTTGCTATTGGTCAAAGAGGACTCCCAAACATAGAGGGATGTGTGGGAGTTGTTATTCTCCATCGTTGTCGGATACTTTAAGGAGGAAAGGAAGCAGCATACTTTGTGGCAGTCAAACTATTTATCCCAGACACCGGAGATCCTCTTCGGCCACCCACAAGCGCAGGATGTCTTGGAAGAGTGCTCAGGGTGTTATTCCATTGCTCACTAATGGTGGTGATGGTAGGGTAGGGTCATCTATAGGAACTGGCAGGAGTGACGATGAACTTTCTACAAACTTTGGGGAGCTGGACCTTGAGGGCTTGAGTAGATTGGATGGAAGGCGGTGGTCATCAAGCTGTAGGAGTCAAGAGGGATTGGAGATTATAGCTCTCAATGGGGAAGGGGTGGAGGAGGAAGACACTCCAGAAAATAGTCGGAGTTTCAGCCAGAAGTATAGGCCTATATTCTTCAGTGAATTGATTGGGCAGAATATCGTGGTACAGTCACTTATGAATGCTGTTTCAAGGGGTCGAATAGCTCCTGTTTATCTTTTTCAAGGTCCCCGTGGGACTGGTAAAACATCAACAGCACGAATATTTGCTGCTGCATTGAATTGTGTGGCTCTTGATGAGAGTAAGCCTTGTGGCTACTGCAGGGAATGTACAGATTTTATTTCTGGCAAGAGCAGCGATCTGCTGGAAGTTGACGGAACCAATAAAAAGGGAATTGATAAAGCTAGATATTTACTGAAAAGATTGTCAGTTGCTTCATCATCCGCTTCCACACGATATACAGTTTTTGTCATTGATGAGTGTCACCTGTTACCATCCAAGGCATGGCTGGGGTTTCTCAAGTTTCTCGAGGAACCACCTCAGCGAGTTGTATTCATATTCATCACATCTGATCTTGACAATGTGCCTCGAACAATACAATCCCGATGTCAGAAGTACCTTTATAATAAAATTAAAGATGTGGATATTGTGGATAGATTGAGGAAAATATCTGCTCAGGAGAACCTTGATGTTGAAGAAGATGCTTTGGACCTCATTGCTACAAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTGGAACAGCTTAGTTTGCTGGGAAAGAGAATTAGTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAACTATTGGAACTTTTGGAATTAGCAATGTCATCGAACACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTCATTATGGACATCATTGCTGGATCATACACAGTCATTGATTCCAAACCGGATGAAGCATTCTTTGGTGGACGAAGCTTGAATGACTCGGAGTTGGAGAGGTTAAAGCATTCTTTAAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTCACAGCAACACTCTTGCAACTTGGTTCTATGTCATCTCCAGATCTCACTCAGTCAGGCAGCAGCAGGAGGCCGAGCTGCAAAACAACTGATGATGATCCATCAAGTGCTTCAAGAGAAGTTACTGCTTCCAAGCATATGTCTGACCTTAAATATATGCCCCGGAAGTCAATATCACCTACATCCCAGCAGAAAGCATTAAATGGCAATTCTGGCCATCGAAGGGATATTTCCTCAAACATTGATGGTTTAAGCTTGAAATCAAAGCCATCAAATAGCCCAGTCATAGATGATGGCTCCACAATTGTCTCATCTGATGATATTATGGTTGGCAATATGATGTATAGATGCGTGGATTCTGGAAAGTTACATGATATCTGGGCACGTTGTATTGGGAGGTGTCACTCGAAGACATTGAGGCAGTTGCTACTCAATCATGGAAAGCTTGTATCCATATGTGAAGTTGAAGGTGTTTTGGTAGCATATGTTGCATTTGGGGATGGAGATATTAAACTCAGGGCTGAGAGGTTTTCGAGAAGTATTACAAACTCCATGGAGATGGTTCTTAGACGCAATGTAGATGTCAGAATTATCCACTTGCCAGATGGTGTAGGTGAAACTCCGGTTAATATGCCAAGACAGGCTGAGTCAGCATTGACAAGTGAGAAGGAACAAAGAGGAGGTCGCGGGAATGGAACAGATCCTTTGCTTGATGGAAACCTTCAACCTGCAGCCGATTCCTCTGATGTTCTGGGTGAAAGAAATGGTGTGACGGAGAGAAGGCAAGATAATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAGAGACTGGAAACTGCCTGGTTACAAGCTGTAGAAAAGGGTTCACCAGGATCATTGAGTCGCTTGAGACCTGAGAAGAATCAGGTCCTGCCACAGGAAGGTATCTATTGCATAGATCCAATGGAGTCCACGGATTCAGCAAGATTTTCCTCACAGCAGCATTGGGAAGATGAGCAGAGTAATGATGTCAAAATTTTGAACGTAAAAAATGGAAGGGTCTTGCAGAAAGACCAAACTGGTAGAAGGTATCCCATGTCCCCAAGTTTACTGCATGACAGCAGTTTAGCAGCAAGTTCTGGCAAAGACAATCCGGGATATGAATCGAGCTCGGGAGCTGGTGGTTGTGGATTTTTATGCTGGAATAAGGCAAAGCCTAGAAGGGTAGTCAAGGTACGAGGTGGTACTCCAGTTGGTGCGCGTAAAGTCGGGCGCTTCCCACTGTTTGGGGACTGTGGTAAGCACAAGAAAAGGGACGTGACCACATAA 3777 0.4504 MSEMASKLHLKKELTQIRKAARVLRDPGTTSSWKSPLNSSRSASVSAWNSAFNNVHGPTTTTKFTSHSQLDSHVNSVPPTTNKRVFLYNWKTHKSSSDKNDRDQDEEEEEDAAIDGSSSLLGSFEDTLSDAHNACDSKSDTYLGTGGGGPRSSSIFRCGDTNLISLATPSARRTAPPKKKSKKPNSNTLSHLDPMAKFQHRDTNLNLGRKVFKSNNALLEGLPPMPFTRDDSIDHSDDTEDYSNSEDVRQASGSATSPLLLKLKRKNWSRSSSKLLRTSRKEDSSYSYSTPALSTSSYNRYGRQYPSTVGSWDGTTTSMNDGDDEIDDRLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSILCGSQTIYPRHRRSSSATHKRRMSWKSAQGVIPLLTNGGDGRVGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIIALNGEGVEEEDTPENSRSFSQKYRPIFFSELIGQNIVVQSLMNAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVALDESKPCGYCRECTDFISGKSSDLLEVDGTNKKGIDKARYLLKRLSVASSSASTRYTVFVIDECHLLPSKAWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLYNKIKDVDIVDRLRKISAQENLDVEEDALDLIATNADGSLRDAETMLEQLSLLGKRISTSLVNELVGVVSDEKLLELLELAMSSNTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVIDSKPDEAFFGGRSLNDSELERLKHSLKLLSEAEKQLRTSSERSTWFTATLLQLGSMSSPDLTQSGSSRRPSCKTTDDDPSSASREVTASKHMSDLKYMPRKSISPTSQQKALNGNSGHRRDISSNIDGLSLKSKPSNSPVIDDGSTIVSSDDIMVGNMMYRCVDSGKLHDIWARCIGRCHSKTLRQLLLNHGKLVSICEVEGVLVAYVAFGDGDIKLRAERFSRSITNSMEMVLRRNVDVRIIHLPDGVGETPVNMPRQAESALTSEKEQRGGRGNGTDPLLDGNLQPAADSSDVLGERNGVTERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQEGIYCIDPMESTDSARFSSQQHWEDEQSNDVKILNVKNGRVLQKDQTGRRYPMSPSLLHDSSLAASSGKDNPGYESSSGAGGCGFLCWNKAKPRRVVKVRGGTPVGARKVGRFPLFGDCGKHKKRDVTT 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02933 1258 MobiDBLite consensus disorder prediction 1172 1204 - -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 833 847 - -
Aip10g02933 1258 SMART AAA_5 513 663 IPR003593 -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 167 197 - -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 1188 1203 - -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 219 256 - -
Aip10g02933 1258 CDD AAA 495 653 - -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 848 874 - -
Aip10g02933 1258 Pfam DNA polymerase III, delta subunit 496 652 - -
Aip10g02933 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 703 IPR027417 -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 271 292 - -
Aip10g02933 1258 SUPERFAMILY post-AAA+ oligomerization domain-like 727 828 IPR008921 GO:0003677|GO:0006260
Aip10g02933 1258 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 205 1192 - -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 833 920 - -
Aip10g02933 1258 CDD HLD_clamp_pol_III_gamma_tau 656 719 IPR045085 -
Aip10g02933 1258 Gene3D - 658 719 - -
Aip10g02933 1258 Pfam DNA polymerase III subunits gamma and tau domain III 710 830 IPR022754 GO:0003887
Aip10g02933 1258 Gene3D - 473 652 IPR027417 -
Aip10g02933 1258 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 481 830 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Aip10g02933 1258 MobiDBLite consensus disorder prediction 877 920 - -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 230 245 - -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 1028 1088 - -
Aip10g02933 1258 MobiDBLite consensus disorder prediction 93 119 - -
Aip10g02933 1258 PANTHER PROTEIN STICHEL-LIKE 1 205 1192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02933 Aip-Chr10 124459485 124464766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02933 477 771 Core DNA Replication Machinery Family AT1G21690 23.355 3.28e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02933 - - adu:107471079 2398.24