Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02911 ATGAAGAGGACAAGGGATGATGCTTACTCTGGCTCTCAATTCAAACGGCCCTTTGCTTCCTCACGTGGTGATTCCTATGGCCAAACCCAAGGGGCTGGAGGAGGAAGTGGAGGAGGTGGTGGTGGAGGAGCAACCCCGTCTCAGAAATTGACAACCAATGATGCCTTAACTTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAGAGAGAAAAATATGACTTGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAGAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACAATTTGATATTTGGATTTAACACTTTCTTGCCTAAGGGATATGAGATAACACTTGATGAGGAAGAGGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCGATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTCAAGGACCATACAGATTTGCTCGATGAGTTCACTAGATTCTTACCAGATACTTCTCAAGCACCTTCTGCACAGCATGCTCCATATGGTCGAAGTTCATTGCAGCGATTCAATGAGCGGAGTTCTACAGCACCCATGATGCGACAAGTGCATGTAGACAAGCAACGTTATCGACGAGACAGGATTCTTGGCTCTCATGATCGTGATCAGAGCGTTGATCGAGCTGATCTGGATGATGACAAAATAAACATGCACAAGGAGCAGAGGAAACGTGAGAATAGGGATAGAAGAGTCCGTGATCATGATGAGAGAGAACAAGATCTTGATAATGGCAGGGATTTGAACTTGCAACGCTTTCAAGACAAAAAGAAATCTGTCAAGAAGGCGGAAGGGTTTGCCATGGCTTCTGACTTTCCTTCATATGATGACAAAGATGCGTTAAAGACCATGTATGGTCAAGCATTCAGCTTCTGCGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGGATAATAAAAAGGAACGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAACACTCTGATCTATTGCATGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGACGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCTCTGTCTACCGATGGTCATATATCAAGATCATCAAAGTTGGAGGACAAAGATAAAGAGCACAAGCGTGAGATGGATGGACCTAAAGAGAAAGAAAGATACAGTAAATACTCGGGAAAATCCATTCAAGAACTCGATCTTAGTGACTGCAAACGTTGTACTCCAAGCTATAGGCTGCTGCCTGCAGATTATCCAATTCCTGTGGCTAGTCAGAGATCTGAACTTGGAGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCAGGGAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTCAGATGCGAAGATGACAGATTTGAGATGGACATGCTATTAGAGTCAGTGAGTTCTGCTGCGAAACGTGTAGAGGAGTTGTCTAATAGCATTAATGAAAATAAGATGGAGAACCTGGGCCGTATTGAAGATCAATTTACTGCTTTAAATTTAAGGTGCATTGAACGTTTGTATGGTGACCATGGTCTCGATGTGATAGACATTTTGCGTAAAAATCCAACTCATGCTCTGCCTGTAATATTGACTCGACTTAAGCAGAAACAAGAGGAGTGGACTAAGTGTCGTGCAGATTTCAATAAAGTTTGGGCTGAAATTTATGCTAAGAACCACTACAAGTCACTCGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGCACACGAAATATTTGGTGACCGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGATATTCTTCAGTCCATTGCTGCTGGAAGTAAACAGCCTCTAACTCCACATCTTGAGTTTGAATATCCTGATGCTGCAATTCATGAAGACTTGTATAAACTTATTCGGTATTCATGTGAGGAGATTTACTCTAGTAGGGAGTTGATGAATAAAACTATGAGGCTCTGGTGTACCTTTTTGGAACCGATGCTTGGTGTTCCTTCCCGATCTCATGGGACAGAAAAGGTGGAAGAGAGGAAAGCAGGGCCTAATGTTGGCAATGCAGGCAATGGAAGTCCTCATGGAGACTCCATTTCAATTAATTCAAGGTTACCAAAATCTGACAAGAATGAAGCAGATGGTAGAGTACCTGATGTAAAGAATGTTCACCGGACTAGTGCTGCAGCTAATGATAAAGAAAATGGATCTGTTGGTCGTGAAAATGTCTGTAGAGATGAACTCCCACTGGATAAAGGGCAGACAAATATAGAGTGCACCGATAAAGTCTCTGGGATTAATAAACAATTTTCTGCTGATGAACAAGGAGCTAAAAACAATGCATTAATTTCAGTTAGAGGAGAAAAATTAGAAGATAATCCTAGCAGGAACAACGAAGAATTGACTCCAGGCACTGTCACTACTCCTTCTCGACCTACTGACGCTGACGAATCCGTACCTAAACCTCAGGAAGTAAATGCTACTTTGGTAGAGGGGTCTGATGTTACAGCTCCAGTTACAGTGGCCGATGGGGTACCAACTCAGAGCAGTAAAGTTAGAAGCCATGAAGAATCTGCTGGGCCTTGTAAAACTGAAAAGGAAGAGGGCGAGTTATCACCAAATGGTGATTCGGAGGAGGATAACTTTGTTGCTTATGGAGATTCAAATGTGCAGTCAATGTCTAAGTCAAAGCACACTATTGAGAGAAGAAAATATCAGTCCAGAATTGGAGAGGATGAGTCCTGCCCAGAGGCTGGAGCAGGCGATAATGATGCAGATGCAGATGATGAGGACAGTGAAAATGTGTCTGAAGCTGGTGAAGATGTCTCGGGCAGTGAATCTGCTGGTGATGAATGCTTCCGAGAGGACCACGAGGATGAGGAAGATATAGAGCATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCAGAGGGTACATGTGATGCACAATCTGCTGGAGGAGATGGTTCATCTCAGCCACATTCAGAAAGGTTTCTTTCGTCTGTGAAACCTCTGACAAAGCATGTTTCAGCAGTGTCATATGTTGAAGACATGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGCACTTTTTAGGCTTCATCAACTTCTTTATGAAAGGATCTTGTCTGCAAAAACCAATGCCACGAATTCAGAAATGAAATGGAAAGCCAAGGATGCCAGCTCCCCAGATCCTTATTTGAAATTTATGGATGCATTGTACAGCCTTCTTGATGGATCTTTTGAGAATGCAAAGTTTGAAGATGAATGCCGNNNNNNNNNNNNNNNNNNNNNNAACCAGTCATATGTGTTATTCACATTGGACAAATTAATATATAAACTAGTTAGACATCTTCAAAATGTTGCAACAGATGATATGGCCAATAAGCTTCTCCAATTGTATGAGTACGAAAAGTCTCGGAAACCTGGGAAACTAAACGATTCAGTATATCATGCAAATGCACATGTTATCCTTAATGAGGACAATATATATCGATTGCAATGTTCCTCACCACCCTCTCGGCTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGATGTTTGCTGTTTCTATTGATCCAAATTTTTCTTTTTACCTTCACAATGATTTTCTCTCCGTCCTTCCTTCTAAAAAGGAACCCCATGGCATTTTACTTCAAAGAAACAAACGCAAATTTGGAGATATTGATGAGCTTTCTGGAATAACTTCTGCTATGGAAGGTGTCAAACTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCGTCCAAGATCTCCTATGTTCTCGACACACAAGATTTCTTTTTCCGGCCGAAAAGGAGAAGGCAAGCGTCACCGGAAACCAGATCTTGTCGACACCGGAGGGACAGAGAGGAAAGATACCGCAGGTTGATGGCGACCGTGTCTCAATGA 4146 0.4144 MKRTRDDAYSGSQFKRPFASSRGDSYGQTQGAGGGSGGGGGGGATPSQKLTTNDALTYLKEVKDMFQDQREKYDLFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEEEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHTDLLDEFTRFLPDTSQAPSAQHAPYGRSSLQRFNERSSTAPMMRQVHVDKQRYRRDRILGSHDRDQSVDRADLDDDKINMHKEQRKRENRDRRVRDHDEREQDLDNGRDLNLQRFQDKKKSVKKAEGFAMASDFPSYDDKDALKTMYGQAFSFCEKVKEKLSSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLLHEFNDFLERCENIDGFLAGVMSKKSLSTDGHISRSSKLEDKDKEHKREMDGPKEKERYSKYSGKSIQELDLSDCKRCTPSYRLLPADYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFEMDMLLESVSSAAKRVEELSNSINENKMENLGRIEDQFTALNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWTKCRADFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLHTKYLVTEIKEIKEKQQKEDDILQSIAAGSKQPLTPHLEFEYPDAAIHEDLYKLIRYSCEEIYSSRELMNKTMRLWCTFLEPMLGVPSRSHGTEKVEERKAGPNVGNAGNGSPHGDSISINSRLPKSDKNEADGRVPDVKNVHRTSAAANDKENGSVGRENVCRDELPLDKGQTNIECTDKVSGINKQFSADEQGAKNNALISVRGEKLEDNPSRNNEELTPGTVTTPSRPTDADESVPKPQEVNATLVEGSDVTAPVTVADGVPTQSSKVRSHEESAGPCKTEKEEGELSPNGDSEEDNFVAYGDSNVQSMSKSKHTIERRKYQSRIGEDESCPEAGAGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEDEEDIEHDDVDGKAESEGEAEGTCDAQSAGGDGSSQPHSERFLSSVKPLTKHVSAVSYVEDMKDSRVFYGNDDFYALFRLHQLLYERILSAKTNATNSEMKWKAKDASSPDPYLKFMDALYSLLDGSFENAKFEDECXXXXXXXXNQSYVLFTLDKLIYKLVRHLQNVATDDMANKLLQLYEYEKSRKPGKLNDSVYHANAHVILNEDNIYRLQCSSPPSRLSIQLMDNMNEKPEMFAVSIDPNFSFYLHNDFLSVLPSKKEPHGILLQRNKRKFGDIDELSGITSAMEGVKLINGLECKIACSSSKISYVLDTQDFFFRPKRRRQASPETRSCRHRRDREERYRRLMATVSQ 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02911 1381 ProSiteProfiles PAH domain profile. 48 118 IPR003822 GO:0006355
Aip10g02911 1381 SUPERFAMILY PAH2 domain 46 117 IPR036600 GO:0006355
Aip10g02911 1381 MobiDBLite consensus disorder prediction 777 791 - -
Aip10g02911 1381 ProSiteProfiles PAH domain profile. 132 202 IPR003822 GO:0006355
Aip10g02911 1381 MobiDBLite consensus disorder prediction 761 776 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 14 32 - -
Aip10g02911 1381 Pfam Paired amphipathic helix repeat 353 397 IPR003822 GO:0006355
Aip10g02911 1381 Pfam Paired amphipathic helix repeat 155 199 IPR003822 GO:0006355
Aip10g02911 1381 Pfam Paired amphipathic helix repeat 71 115 IPR003822 GO:0006355
Aip10g02911 1381 MobiDBLite consensus disorder prediction 421 449 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 202 304 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 1056 1071 - -
Aip10g02911 1381 Gene3D Paired amphipathic helix 131 203 IPR036600 GO:0006355
Aip10g02911 1381 Pfam C-terminal domain of Sin3a protein 1096 1346 IPR031693 -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 926 941 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 966 981 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 423 449 - -
Aip10g02911 1381 Pfam Sin3 family co-repressor 465 559 IPR013194 -
Aip10g02911 1381 Gene3D Paired amphipathic helix 328 402 IPR036600 GO:0006355
Aip10g02911 1381 SMART hdac_interact2seq4b 463 563 IPR013194 -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 987 1007 - -
Aip10g02911 1381 Gene3D Paired amphipathic helix 54 116 IPR036600 GO:0006355
Aip10g02911 1381 MobiDBLite consensus disorder prediction 235 304 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 738 812 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 1023 1038 - -
Aip10g02911 1381 PANTHER SIN3B-RELATED 1 1369 IPR039774 GO:0003714
Aip10g02911 1381 MobiDBLite consensus disorder prediction 849 1073 - -
Aip10g02911 1381 SUPERFAMILY PAH2 domain 333 400 IPR036600 GO:0006355
Aip10g02911 1381 SUPERFAMILY PAH2 domain 129 201 IPR036600 GO:0006355
Aip10g02911 1381 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1369 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 1 49 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 867 884 - -
Aip10g02911 1381 MobiDBLite consensus disorder prediction 202 229 - -
Aip10g02911 1381 ProSiteProfiles PAH domain profile. 331 400 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02911 Aip-Chr10 123892315 123907243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02911 22 151 WRKY Transcription Factor Family AT4G12020 44.138 6.13e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip10g02911 Sin3a_C 9.9e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02911 K11644 - gmx:100807181 2140.54