Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02864 ATGGTTGGTAGCCGTCAAGAACTCACCTCGCCACTCTTCAGCACAAGAGAATCCACCACAGCCAGGAAAGGAACAATGGCTTTCCTCAGTAGAGCTGGAAATATACTAAGGCAAGTGACAAGTAGGAAGATCAGTTCGGATTTATGTGAAATCCCGTCTGTTTTCCGGTCTGTACGGTGCATGTCAAATGCTCCAAGTACAAAGCTGTTTATAGGAGGTGTTTCGTATTCCACTGATGAGCAAAGTTTGAGGGAGGTTTTTGGGAAATATGGTGATGTTGTTGATGCAAGGATAATTGTGGACCGTGATTCTGGCAGATCCAGAGGATTTGGGTTTATTACTTACAGTTCGGTTGAGGAGGCGTCAAGTGCCATTCAGGCCTTAGATGGGCAGGATCTACATGGTCGCCGAGTTAAGGTAAATTTTGCAAGCGAAAGACCTCGTGGATTTCAAGGTGGTGGTTTCGGTGGCTCTTTTGACAATGCTCCCTATGGTAACTCTCCATATGGTGCCAGTTTAGGTGGTGGTGGCAGCTATGGTGGTGCATATGGTGCCAATGTTGCTGGAGGTTATGGTAACGGAAGCAGTGGATATGGCGGAGACAGCTATGGATCAGGTGGTAATTTTGCAGGCAGTGTCTCTGGCGATAACTATGCTGCTGATAACAGTTTTGGAACTGGAACAGCTGGTAGCAATTACAGTGGAAATGGGATGAAGCATGCAAATGACAGTAGCTTCCCAAGTGGAAACACTTACAACAGTGAGAGTAGCGGAGGTTATGGTGGAGGAAATGATATTGGTACTTATGGTAATGCTGCTGCTAGTGGTGGAGGCTATGGTGGCTATGTCCCGGCTTCTGGATTTGACAGGAGCAATAATTACAACACTTCTGCTGGATTTCCTAACAGTGATAACTATGCCAACGCTGCTGGTGGTGGTGGAAACAGTTTCCCCAGTAGTCAATACAATGGAAGTGCCATGGCCGGGTATGGCAGTGGTGGTGTGGGTTCTGGCAGCAGTTTTGCCAGTGGATATGGAGCAACGGGACATGGTAGCACTAATGAATGCAATAACGATCAAGGAACTACTGTGGATGATTTTGGAGGCTCCATGGAATCAAATTTCAAGGGTAACTATGAGGAATCCGGTGCTTATGCAAAACGGGCTTGA 1170 0.4684 MVGSRQELTSPLFSTRESTTARKGTMAFLSRAGNILRQVTSRKISSDLCEIPSVFRSVRCMSNAPSTKLFIGGVSYSTDEQSLREVFGKYGDVVDARIIVDRDSGRSRGFGFITYSSVEEASSAIQALDGQDLHGRRVKVNFASERPRGFQGGGFGGSFDNAPYGNSPYGASLGGGGSYGGAYGANVAGGYGNGSSGYGGDSYGSGGNFAGSVSGDNYAADNSFGTGTAGSNYSGNGMKHANDSSFPSGNTYNSESSGGYGGGNDIGTYGNAAASGGGYGGYVPASGFDRSNNYNTSAGFPNSDNYANAAGGGGNSFPSSQYNGSAMAGYGSGGVGSGSSFASGYGATGHGSTNECNNDQGTTVDDFGGSMESNFKGNYEESGAYAKRA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02864 389 Gene3D - 57 209 IPR012677 -
Aip10g02864 389 MobiDBLite consensus disorder prediction 349 369 - -
Aip10g02864 389 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 244 - -
Aip10g02864 389 SUPERFAMILY RNA-binding domain, RBD 63 177 IPR035979 GO:0003676
Aip10g02864 389 MobiDBLite consensus disorder prediction 349 389 - -
Aip10g02864 389 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 26 244 - -
Aip10g02864 389 SMART rrm1_1 68 141 IPR000504 GO:0003723
Aip10g02864 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 139 IPR000504 GO:0003723
Aip10g02864 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02864 Aip-Chr10 122444042 122446560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02864 69 215 Eukaryotic Initiation Factors Gene Family AT3G16380 31.579 1.24e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02864 K12741 - ccaj:109815980 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02864 10 122444042 122446560 Aip10g02864 10 122444042 122446560 ECH