Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02855 ATGCAAAAGAGAAGGTTGTTACTTGTTAGTGGATTAGCAACTTATTTGGAAGGGTGGGACTGTTTCGGCTATGACATTAGATATGAGAATACTTCTTGGGGATCCGCAATTGGATTCAAGTTGGATAGTCTTTTAAAGATTACTGACACTTGTGCTTCTAACAATAAGATGACACTGATGCACTATCTTTGCAAGTTGGGAGCTCCTGAGATTGTTCCAGATTATCCAATTCTTTCTGTTGACGACCTAGCAGATCAAATAGCCGAGGTTCTCAACTTTTTTGGTCTTAGTGCAGTAATGTGCATAGGACTAGCTGCCGGGGCTTACATTCTTACCTTATTTGCTTATAGACAACGTGTACTTGGTTTGATACTTGTTTCACCTCTATGCAAAGAACCATCTTGGACTGAGTGGTTGTGCAACAAGGTCATGTCAAATTTACTCTATTTTTGTGGCATCTTATACTTCTCACTGCTCCAGCTCTTCCGTGGCGACACTATCCTCATCAAGGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGTTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAATCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTGTGGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCTGGATAAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCAATTGGTGTGAAACCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTTTGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTCTTATGGATGGATTGAAATCTCATGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCCAGCATTGAGAAGGTTCGGTAGATTTGATAGGAAAATTGATATTGGTGTTCTTGATGAAGTTGGCCGATTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATATATTATTCAATACTTGCGTTGCCTTCGTTAACAAGCTTAGCTGCCTCGCCATTGTCGCCGCCGAGTGTTTGTCGCTAGTGAGGAGAAGACGCTGTCGCATCTCCCAGTCGTCCCTGCAGCCGCCGTGCCAGCGAGAAGAAGGCCGTCCAGTTGCACAGAGCAAGAGAGATAGAAAGCACGGGAGCAGAGGAGAGAGGGGAGACCTGCGCCAGCCAccaccacttctgccgcccgaaaccccgctgtcgtcatcggaaaactttggcggtaagggtttttga 1770 0.4266 MQKRRLLLVSGLATYLEGWDCFGYDIRYENTSWGSAIGFKLDSLLKITDTCASNNKMTLMHYLCKLGAPEIVPDYPILSVDDLADQIAEVLNFFGLSAVMCIGLAAGAYILTLFAYRQRVLGLILVSPLCKEPSWTEWLCNKVMSNLLYFCGILYFSLLQLFRGDTILIKGKKRRDTVCIALVDDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKSYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDKVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGFGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRILMDGLKSHAHVIVIGATNRPNSIDPALRRFGRFDRKIDIGVLDEVGRFEVLRIHTKNMKLSDDILFNTCVAFVNKLSCLAIVAAECLSLVRRRRCRISQSSLQPPCQREEGRPVAQSKRDRKHGSRGERGDLRQPPPLLPPETPLSSSENFGGKGF 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02855 589 Gene3D - 218 302 - -
Aip10g02855 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 508 IPR027417 -
Aip10g02855 589 MobiDBLite consensus disorder prediction 545 563 - -
Aip10g02855 589 SMART CDC48_N_2 142 218 IPR003338 -
Aip10g02855 589 SUPERFAMILY Formin homology 2 domain (FH2 domain) 30 66 - -
Aip10g02855 589 SUPERFAMILY Cdc48 domain 2-like 217 309 IPR029067 -
Aip10g02855 589 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 158 500 - -
Aip10g02855 589 SMART AAA_5 346 476 IPR003593 -
Aip10g02855 589 Pfam Cell division protein 48 (CDC48), N-terminal domain 157 216 IPR003338 -
Aip10g02855 589 SMART CDC48_2_2 235 301 IPR004201 -
Aip10g02855 589 SUPERFAMILY alpha/beta-Hydrolases 59 143 IPR029058 -
Aip10g02855 589 Pfam ATPase family associated with various cellular activities (AAA) 350 473 IPR003959 GO:0005524|GO:0016887
Aip10g02855 589 ProSitePatterns AAA-protein family signature. 444 462 IPR003960 GO:0005524|GO:0016887
Aip10g02855 589 SUPERFAMILY ADC-like 157 215 IPR009010 -
Aip10g02855 589 Pfam Ndr family 66 153 IPR004142 -
Aip10g02855 589 Gene3D - 156 217 - -
Aip10g02855 589 Pfam Cell division protein 48 (CDC48), domain 2 237 298 IPR004201 -
Aip10g02855 589 Gene3D - 308 474 IPR027417 -
Aip10g02855 589 PANTHER AAA-FAMILY ATPASE 158 500 - -
Aip10g02855 589 CDD AAA 316 473 - -
Aip10g02855 589 Gene3D Formin, FH2 domain 26 95 IPR042201 -
Aip10g02855 589 MobiDBLite consensus disorder prediction 534 589 - -
Aip10g02855 589 Gene3D - 475 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02855 Aip-Chr10 121936941 121943881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02855 309 497 Calmodulin-binding Proteins AT3G56690 47.716 6.48e-47 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02855 K13525 - aip:107621123 905.205