Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02834 ATGGAGTCTTGGAGTTATGTTTCTGAAGAGAAGGGTTATGTCTCAAACGATGCGATTTCCCCTCCCAACAGTGTTGGGAGGAACAGCAAAGGTTCCTTCTTGGGTTGGGAACTGAAAACCCCAGGTGGTTTTTCCATTGAGAATCAAGGTTTTGAGGAATTGGGGTTCCCAGGGATGAAACAATTGCCCCAAGATCCTAATCCAATTAGTAGTGTTCATAGCAGAAAGATTGATAATGACCCTGCTATGGCTACCCCAAACGCATTCTCTTCAAGAGATGATTTCAATTCCAAGATTTCAGCCTCTTTGGGGGACTCTAATGGTGGTGGCTGTGATTCACTTATTGACTTGAAGCTTGGTAGGTTTCCTGATCATGGTGATGTTGGTGTGGTGGTGCCAGCATTCTCCAAAGGGGCCCCTATTTTGTCGTCATCGGAGTCGTCCACGCCGCCGAAGAGGGTTCGAGCTTCTGGGATTCACTCTCAGACAGCATACTGCCAGGTCTATGGATGCAACAAGGATCTGAGTGGTTGCAAGGACTACCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACTTCCAAAGTTATTGTCAATGGTATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAACGAGCGGCGGAGAAAACCACAAGTTGGTATACACTCTGGAAAGCCTGGGAGGTTGCTTCAGCCATATGGTGAAAGCAGATTCCAGGGAAACATGCTAACATCAGCATCTTTCATCTGCCAAGAGATACTCCCCGCTGGGGCCTTATCTTCTGAGAGATATGGAACAGGTGACTGGTGGAGACCTATAAAAACCGAAGACGGCTCTGGTTTTAGGCATCTTTCTTCTGTTCCTATCTCTAATGGACACCCTCAGTCACGACCTCTGTTTCCTTCATATAATGAGAAGCAATTTCCCTTTCTTCATGAAAATAATGATGCTACATCTGCTGGGGGTAGCATCTTCTGTGAAAATAATAGCTCATATCCACCTGCCATAGGAGGCCCGAACTCGGGGTCACAATCATTATTCCAGGACACGTCCATAGGAGGTGAGGACTTCAATGTTTTCGATACAGAATCGGCTGTTCAAGGACTATCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACTCTTCAAGCCAGTCATCTGGAATTCCCATGGCTCGATCAATGGTCATTCGGAGCAGCCATAGCAGTAGCCATTATGCCATGAGCCAGGTCTCTGAAAAGATGATAGGAATAACTTCGCAAGCTTCGAGTGGAGTCTCCGATAGGTTTCCATCCGAGTTGAATCCTGCAGATGGAAGTCCTCTTAGCTCTGTGCTGATATCTGACACCAATGACATTGTCAACTTTGAAATGGCAGATGGAATATTCCATGGTTCAGATTTCGTGAATGTGAAAGATCGTCTCTCATGTGATGATGTCCCGACTATCGACTTGCTTCAACTGTCTTCGCAGCTTCAGCGAGTTGAGAGTGAGAGACAATCCTTGCAGGTGAAGCAAGAAAATGATTCATCGGTCTCTCTCCGGATTACTTAA 1644 0.458 MESWSYVSEEKGYVSNDAISPPNSVGRNSKGSFLGWELKTPGGFSIENQGFEELGFPGMKQLPQDPNPISSVHSRKIDNDPAMATPNAFSSRDDFNSKISASLGDSNGGGCDSLIDLKLGRFPDHGDVGVVVPAFSKGAPILSSSESSTPPKRVRASGIHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKPGRLLQPYGESRFQGNMLTSASFICQEILPAGALSSERYGTGDWWRPIKTEDGSGFRHLSSVPISNGHPQSRPLFPSYNEKQFPFLHENNDATSAGGSIFCENNSSYPPAIGGPNSGSQSLFQDTSIGGEDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMARSMVIRSSHSSSHYAMSQVSEKMIGITSQASSGVSDRFPSELNPADGSPLSSVLISDTNDIVNFEMADGIFHGSDFVNVKDRLSCDDVPTIDLLQLSSQLQRVESERQSLQVKQENDSSVSLRIT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02834 547 Gene3D - 157 227 IPR036893 GO:0003677|GO:0005634
Aip10g02834 547 SUPERFAMILY SBT domain 164 244 IPR036893 GO:0003677|GO:0005634
Aip10g02834 547 Pfam SBP domain 166 239 IPR004333 GO:0003677
Aip10g02834 547 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
Aip10g02834 547 PANTHER 1 PROTEIN, PUTATIVE-RELATED 37 547 - -
Aip10g02834 547 Coils Coil 515 535 - -
Aip10g02834 547 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 547 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02834 Aip-Chr10 121175781 121179965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02834 115 282 SBP-box Gene Family AT1G69170 53.571 1.10e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip10g02834 SBP 5.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02834 - - gmx:100777766 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02248 01 118988723 118992300 Aip10g02834 10 121175781 121179965 ECH
Aip10g02834 10 121175781 121179965 Aip10g02834 10 121175781 121179965 ECH