Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02827 ATGGGAAGAGGGAAGGTTGTGCTGAAGAGAATAGAGAACAAGGTAAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCATATGAGCTTTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATGATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTCTAGTTCCTCCAGCATGATGAAAACCATAGAGAGATATCATATGCACAAGTATAGCTTGCCACAGACCACCCAAGTAAGAAACCATGACACTCAGCCTCAGAATACTTACCAAGACTATGTGACATTGAAAGCATACGTAGAACTCCTACAACGTTCACAACGGTAA 339 0.4248 MGRGKVVLKRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALMIFSNRGKLYEFSSSSSMMKTIERYHMHKYSLPQTTQVRNHDTQPQNTYQDYVTLKAYVELLQRSQR 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02827 112 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip10g02827 112 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Aip10g02827 112 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip10g02827 112 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Aip10g02827 112 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 112 - -
Aip10g02827 112 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 112 - -
Aip10g02827 112 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip10g02827 112 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip10g02827 112 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip10g02827 112 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip10g02827 112 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aip10g02827 112 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02827 Aip-Chr10 120975683 120982534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02827 1 112 MADS-box Gene Family AT2G03710 66.372 1.75e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip10g02827 SRF-TF 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02827 - K09264 gmx:100797819 159.458