Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02826 ATGGGGCGAGGGAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAGAGGAGAGCTGGTTTGGTTAAGAAGGCTAACGAGATCTCCGTTCTCTGTGATGCCGAGGTTGCTCTCATCATCTTCTCTACCAAAGGGAAGCTCTTTCAGTTCTCTAGCGATTCCTGTATGGAGAGGATAATCGAAAGGTATGAAAGGTATTCATATGCGGAGAGACAGCAGCTTGTGGCGAATGCTCAGGGACCAAATGCAAACTGGACTTTAGAACATGCAAAGCTCAAAGCAAGGGTGGAAGTCTTACAAAGGAATCAAAGGCATTTTATGGGTGAAGATCTTCAAGGCCTAAGTATGAGAGAACTTCAGAATTTAGAACAACAGCTTGATTCTGCTCTTAAACAAATTAGATCACGAAAGAATCAAATCATGTATGAGAATATCTCACTGCTTCAGAAAAAGGAGAAAGCTCTAAATGAACAAAACAATTCACTAGCTAAGAAGATCAAGGGGAAAGAAAAAGCTACCACAGAACAGACTCGTCAATTGGAGCTGCAAGATAATTATACTGTTGCACCTCAAACCTCAGAAAACTTGAATATTAGAGGAATGCCACAAGATAGAAGTGATAATGAAGAACATAATGATAATGAAGAAGTGGGATATTCTTTGCACAAGATTCCAGAAGAAGTTAAACTTGATTTGATGTTCTTTGATCCTATCAAGCAGGCAGGAGATAAAACAGcggccttttggtggatttggagggataggaacaatgacatcttCCACCAAAATGATCTATGGAGTAAGGAGAAAATTGTTCACTTAGTTAAACATGCTGCTCGAGATTTCTCTAATGTTGTTATCAACCAAAAACATATTATTCCTTCTTCTTTGAAATATAACTGGGAACCACCTCCAATGAATGTCTGTAAAGTGAACTGCGATGCAAGCGTTTTTGAAAATGAGCAATTAGCTGGCTTTGGATGTATTATTAGAGACAGCATGGGAATTTGGATAAAAGGTTGTTCTGCCAGTATACCTCTTTCTAGTGTTCTCTATtgtgagctttatgctatttggagagggcttgttatggcttgggattgcgagtgcaaagaggtcatatgtgaaactgataatcttgaTGCGTTTCTTCTTGTTTCGCGAGGCACAACCAGCATGATTAGGAATGACTCTGATCTACTTGACAAAATCAAAGAGATGCTCCAGCGCAATTGGACAGCTATTTTAGTGCACATCCAGCGAACAGCAAACAGAGCGGCTGATTTAATGGCTAAGACTGCTGTTTTAAACAAGCAGGTGTATCTAGAGTGGTTACTTCCTCCTAATAATTTAGACATTATTATTAGAGAGGAGTACTACTCTTTTTCTTAG 1413 0.3567 MGRGRVQLKRIENKINRQVTFSKRRAGLVKKANEISVLCDAEVALIIFSTKGKLFQFSSDSCMERIIERYERYSYAERQQLVANAQGPNANWTLEHAKLKARVEVLQRNQRHFMGEDLQGLSMRELQNLEQQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIKGKEKATTEQTRQLELQDNYTVAPQTSENLNIRGMPQDRSDNEEHNDNEEVGYSLHKIPEEVKLDLMFFDPIKQAGDKTAAFWWIWRDRNNDIFHQNDLWSKEKIVHLVKHAARDFSNVVINQKHIIPSSLKYNWEPPPMNVCKVNCDASVFENEQLAGFGCIIRDSMGIWIKGCSASIPLSSVLYCELYAIWRGLVMAWDCECKEVICETDNLDAFLLVSRGTTSMIRNDSDLLDKIKEMLQRNWTAILVHIQRTANRAADLMAKTAVLNKQVYLEWLLPPNNLDIIIREEYYSFS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02826 470 Coils Coil 89 109 - -
Aip10g02826 470 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Aip10g02826 470 MobiDBLite consensus disorder prediction 198 222 - -
Aip10g02826 470 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Aip10g02826 470 Coils Coil 123 146 - -
Aip10g02826 470 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip10g02826 470 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Aip10g02826 470 SUPERFAMILY Ribonuclease H-like 315 444 IPR012337 -
Aip10g02826 470 CDD RNase_H_like 318 439 IPR044730 -
Aip10g02826 470 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 221 - -
Aip10g02826 470 Gene3D - 315 442 IPR036397 GO:0003676
Aip10g02826 470 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip10g02826 470 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip10g02826 470 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip10g02826 470 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip10g02826 470 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip10g02826 470 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Aip10g02826 470 Coils Coil 152 179 - -
Aip10g02826 470 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip10g02826 470 Pfam Reverse transcriptase-like 319 441 IPR002156 GO:0003676|GO:0004523
Aip10g02826 470 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip10g02826 470 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02826 Aip-Chr10 120943113 120955561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02826 1 211 MADS-box Gene Family AT1G26310 57.642 2.53e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip10g02826 RVT_3 8.5e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02826 K09264 - adu:110281634 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02253 01 119171723 119178816 Aip10g02826 10 120943113 120955561 ECH
Aip04g03472 04 129166928 129172244 Aip10g02826 10 120943113 120955561 ECH
Aip10g02826 10 120943113 120955561 Aip10g02826 10 120943113 120955561 ECH