Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02825 ATGGGGCGAGGGAGAGTGCAATTGAAGAGGATAGAGAACAAGATCAACCGCCAAGTCACTTTCTCGAAGAGAAGAGCGGGGTTGCTTAAGAAGGCGAACGAGATCTCAGTTCTCTGCGATGCTGAGGTGGCTCTCATCGTCTTCTCCTGCAAAGGGAAGCTCTTTCAGTTCTCCAGTGACCCCTGCATGGAGAAGATACTTGAAAGGTATGAGCGGTATTCATATGCAGAGAGGCAGCTCGTTGCAAATGATCAAGGACCAAATGAAAATTGGACTCTAGAATATGCAAGGCTCAAAGCAAGGGTGGAAGTCTTAGAGAGAAATCAAAGGAATTTTATGGGACAAGATCTGCAATGCTTAAGTCTAAAAGAGCTTCAGAATTTAGAACAGCAGCTTGATTCTTTGAGACAAACATTTTAG 420 0.4452 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSCKGKLFQFSSDPCMEKILERYERYSYAERQLVANDQGPNENWTLEYARLKARVEVLERNQRNFMGQDLQCLSLKELQNLEQQLDSLRQTF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02825 139 Coils Coil 88 115 - -
Aip10g02825 139 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Aip10g02825 139 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip10g02825 139 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip10g02825 139 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip10g02825 139 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 134 - -
Aip10g02825 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip10g02825 139 ProSiteProfiles K-box domain profile. 88 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip10g02825 139 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip10g02825 139 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip10g02825 139 Pfam K-box region 87 134 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip10g02825 139 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 134 - -
Aip10g02825 139 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip10g02825 139 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Aip10g02825 139 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02825 Aip-Chr10 120922545 120925254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02825 1 134 MADS-box Gene Family AT1G26310 74.265 8.44e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip10g02825 K-box 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02825 K09264 K09260 gmx:100816836 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02255 01 119233786 119240425 Aip10g02825 10 120922545 120925254 ECH
Aip04g03473 04 129186396 129196675 Aip10g02825 10 120922545 120925254 ECH
Aip10g02825 10 120922545 120925254 Aip10g02825 10 120922545 120925254 ECH