Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02809 ATGAAGATCCGGTCGGTGAAGCTAAGGGAGGCTCACGCCAACAAGGGCGGCCGCCCTTCCTTCTGCTCCGTACTGTGGGACCAGCAGGCTCGCCACCTTGTCACCGCTGCCTCCTCCGACATCTGCGTCGCCCTCCACGACCCCCTCCTTCCCTCCTCCACTCCCCTCAGGACCCTCCGCCACCACCGTGACGGTGTCACCGCCCTCGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCATCGATCATTCCGTCAAGCTCTACAAATTTCCCGCTGGAGAGTTCGAGACTAATATCACCAGGTTTACTCTTCCAATTCGTTCCTTAGCATTCAACAAATCTGGGAGCATGTTGGCAGCTGCTGGTGACGACGAAGGAATCAAGCTCATAAACACAATTGATGGAACCATAGCTAGAGTCCTCAAAGGCCACAAAGGTTCTGTTACTGGCTTAGCTTTTGACCCCAATGGCGAGTACTTAGCATCCTTGGACTCGTCTGGAACCGTTATTTTCTGGGAGCTTCACTCTGGGAGAATCCTTCATAACCTCAAAAACATTGCTCCTGATAACGGTTTAGATGTTTCGACTATGAATGTTCTCAGCTGGAGCCCTGATGGTGAGATGTTGGCTGTTCCAGGGTTGCGAAATGATGTGGTGATATATGATAGGGACACTGCTGAAAAGTTGTTTTCTTTGAGAGGGGATCACGCACAACCTATTTGTTACTTGGGTTGGTCGCCCAATGGAAAATACATGGCTACATCTAGTTTAGACAAGCAGGTTCTTATATGGGATGTTGATAGGAAGCAAGATATTGATAGACAAAAATTTGATGAGAGGATATGTTGCATGGCTTGGAAGCCAATTGGGAATGCCTTGGCTGTTATTGATGTTATGGGGAAGTATGGTATCTGGGAATCTGTTATCCCTTCATCTATGAAGTCTCCAACTGAAGATATACCTGAGAGCAAGAAAAGTAACGGGCTTCTTTTCTTTGAAGAGGATGATGAAGAAGTAAATAGTGCAGGTGGAAGCTTGAGTGATCTTGGTGAAAATAGTAATGGTGAGTCTGAGCCACCTAGCAGGAAAAGATTGCGAAAACAGACATTGAGTGAGGAGAATTTGGATATTGATGATATTGGTGGTGATGAGATTGATTTGTTTCCCAAGGTTGAATCTCATAAGAAACGAAACCGCTCTCAAAAGGAAAAATTGGATGATGTGAGTGTGGGTTATAGAAGCACAGTTGCTACATCTAAATCAAAGATGCAGGAGGCATTTCAACCGGGATCCACTCCTGTGCAGCCGGGAAAGAGGCGCTTCTTGTGCTACAACATGCTTGGAAGCGTAACCACTGTTGAACATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGTGCTCCACGAATTCCATCAATGACTGATCATTTTGGATTTACCATGGCTGCTTTGAATGAGAGTGGAAGCGTCTTTGCAAATCCTTGCAAGGGGGAGAACAACATGAGTACTCTCATGTATCGCCCATTTAGTAGCTGGGCAAATAATAGTGAGTGGTCCATGCGCTTTGAAGGGGAAGAAGTGAAGGTGGTTGCACTTGGTGATGCTTGGGTGGCTGCAGTAACTAGTTTTAACTATCTTCGCATCTTTACTGAGGGTGGTTTGCAGAGGCATATTATTTCAATAGATGGGCCAGTGGTTACTGCATCAGGTTTCAGGGATAAGCTTGCAGTTGTTACCCATGCCTCTGCTTGCCTTCCCTCCAATGATCAGGTGCTAGAATTGAGAGTATTTAATCTACTTCAGGGGACTCAGCTTCTTCGGGGTCGATTGCCAATAACTCCTGGTTCTTCTCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGAGTTCCTATGATTCCAAGGGTGTGCTAAGATTATACACAAGCCAATTTGGTGGTAGCTGGCTCCCGCTCTTCAGTGCTGCTAAGGAGAAGATTGATGAAAACTATTGGGTTGTGGGGTTGAATACAAGCAAGTTATATTGTGTAACGTGCAAAAAGCCTGAAACCTTCCCACAGGTGTTGCCAAAGCCAATCTTCAATGTACTAAATCTTTCATTTCCTCTTGCTTCCTCTGATTTGGGATCTGAAGCCCTTGAAAATGAGTTCATATTGAACAACATGCATCTGTTTGAGATTCAGAAAAGAATAGAAGACATGGCTAGTGCTGGCTTGGATACTAGTTCACTTGATGATGAAGCCTTCAATTATGAAGCAGCACAAGATAGATGTATCCTTAGGCTTATAGCATCCTGCTGTTATGGTGATAAACTTGTGCGTGCGACTGAACTTGTAAAGCTTTTGACACTAGAAAAATCAATGAATGGCGCAATAAAACTTGTACGCTGTGGTTCCTGCATTTTTTAA 2427 0.4504 MKIRSVKLREAHANKGGRPSFCSVLWDQQARHLVTAASSDICVALHDPLLPSSTPLRTLRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPAGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTIDGTIARVLKGHKGSVTGLAFDPNGEYLASLDSSGTVIFWELHSGRILHNLKNIAPDNGLDVSTMNVLSWSPDGEMLAVPGLRNDVVIYDRDTAEKLFSLRGDHAQPICYLGWSPNGKYMATSSLDKQVLIWDVDRKQDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGIWESVIPSSMKSPTEDIPESKKSNGLLFFEEDDEEVNSAGGSLSDLGENSNGESEPPSRKRLRKQTLSEENLDIDDIGGDEIDLFPKVESHKKRNRSQKEKLDDVSVGYRSTVATSKSKMQEAFQPGSTPVQPGKRRFLCYNMLGSVTTVEHDGYSHIEIDFHDTGSAPRIPSMTDHFGFTMAALNESGSVFANPCKGENNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGDAWVAAVTSFNYLRIFTEGGLQRHIISIDGPVVTASGFRDKLAVVTHASACLPSNDQVLELRVFNLLQGTQLLRGRLPITPGSSLSWFGFSEEGQLSSYDSKGVLRLYTSQFGGSWLPLFSAAKEKIDENYWVVGLNTSKLYCVTCKKPETFPQVLPKPIFNVLNLSFPLASSDLGSEALENEFILNNMHLFEIQKRIEDMASAGLDTSSLDDEAFNYEAAQDRCILRLIASCCYGDKLVRATELVKLLTLEKSMNGAIKLVRCGSCIF 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02809 808 MobiDBLite consensus disorder prediction 342 378 - -
Aip10g02809 808 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Aip10g02809 808 MobiDBLite consensus disorder prediction 359 376 - -
Aip10g02809 808 CDD WD40 22 297 - -
Aip10g02809 808 Pfam Minichromosome loss protein, Mcl1, middle region 428 709 IPR022100 -
Aip10g02809 808 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Aip10g02809 808 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Aip10g02809 808 Gene3D - 2 194 IPR015943 GO:0005515
Aip10g02809 808 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Aip10g02809 808 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Aip10g02809 808 SUPERFAMILY WD40 repeat-like 22 308 IPR036322 GO:0005515
Aip10g02809 808 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Aip10g02809 808 Gene3D - 195 325 IPR015943 GO:0005515
Aip10g02809 808 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 801 - -
Aip10g02809 808 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Aip10g02809 808 Pfam WD domain, G-beta repeat 54 90 IPR001680 GO:0005515
Aip10g02809 808 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Aip10g02809 808 Pfam Eukaryotic translation initiation factor eIF2A 193 259 IPR013979 -
Aip10g02809 808 SMART WD40_4 136 175 IPR001680 GO:0005515
Aip10g02809 808 SMART WD40_4 178 224 IPR001680 GO:0005515
Aip10g02809 808 SMART WD40_4 94 133 IPR001680 GO:0005515
Aip10g02809 808 SMART WD40_4 52 91 IPR001680 GO:0005515
Aip10g02809 808 SMART WD40_4 227 267 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02809 52 270 U-box Gene Family AT2G33340 23.874 1.13e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02809 K11274 - gmx:100818807 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02809 10 120336690 120341390 Aip10g02809 10 120336690 120341390 ECH