Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02794 ATGTGCTCAAATATACATGATCTGTACCTCAGCAGGAGAGGTGGCTCTTTGCAAGCTGTGAGGGAGAAATACAAACAACATAAGGTTTATGATTATCTTATTGATACTGCTGCTCGTGATCAAACAAGAGAGTGCACCAATGAGTTCTTGGAAAGTGTTAAAAGCCATGACCTAGCAAAAGCTGAGATTCTCAACATAATAAACATCAGGCCCACCAACATAGTCgaaattccatcactagaagagttagaaaagttaggaagtagGCCATTGAGAATATATTGTGACAATTCAGCTGCTGTATTTATGGCTAAGAATAATATAAGTAGTAGTCGAAGTAAGCACATCGATATTAAGTACTTAGCCATTAAAGATCGAGTTAGGTCTAATGAGGTACAGATAGAGCATATTAGTACTAAACAGATGATATCTGATCCTTTGACAAAAGGCATGCCACCAGAATTGTTTAAGGATCATGTTACTAGTATGGGTTTATGCTCTGTAACGTCACTTGTATGA 519 0.3468 MCSNIHDLYLSRRGGSLQAVREKYKQHKVYDYLIDTAARDQTRECTNEFLESVKSHDLAKAEILNIINIRPTNIVEIPSLEELEKLGSRPLRIYCDNSAAVFMAKNNISSSRSKHIDIKYLAIKDRVRSNEVQIEHISTKQMISDPLTKGMPPELFKDHVTSMGLCSVTSLV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02794 172 CDD RNase_HI_RT_Ty1 80 154 - -
Aip10g02794 172 SMART rpol4neu2 1 94 IPR006590 -
Aip10g02794 172 PANTHER CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN 26 84 IPR038846 GO:0005666|GO:0006384
Aip10g02794 172 Pfam RNA polymerase Rpb4 24 137 IPR005574 GO:0006352|GO:0030880
Aip10g02794 172 Gene3D - 12 88 IPR038324 -
Aip10g02794 172 SUPERFAMILY HRDC-like 23 80 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02794 Aip-Chr10 120000736 120002253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02794 5 28 Core Cell Cycle Gene Families AT1G47210 91.667 6.65e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02794 - - ahf:112728288 166.392