Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02738 ATGCAAAAGGAAAAGGAAGCAATCACCGCCAATAAGGAGGGCACTAATAAGAAGGACATAGGAATAATGGAATGTTGCCATGGAAAAGAGGAAACCCTACCACCTGGGTTTCGATTTCATCCAACCGACGAAGAACTCATTACTTGCTATCTCATAAACAAGATCTCGGATTCAAACTTTTCAGGCAGGGCAATAACTGATGTTGATCTCAATAAATGTGAGCCATGGGAGCTTCCAGGTGCGTATAGTTTGCAACTATTATTATTATACCCAACTGGGGTGCGAACGAACCGAGCCACAAACACGGGGTATTGGAAGACCACCGGAAAAGACAAAGAGATCCTTAATAGTGTTACATCGGAGCTAGTTGGGATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCCCCAAGGGGAGAGAAGAGTAATTGGGTCATGCATGAATATCGCATTCATTCTAAATCCACCTTTCGAACAACCAAGGATGAATGGGTGGTTTGCCGTGTGTTCCAGAAGAGTGCCGGTGCAAAGAAGTACCCTTCTTCCAACCATGCAAGTAGGGCAATGAACCCTTTCAACCTTGAAATAGGTCACCACAATATTGTGCCGCCGCCGCCAATGATGCAACTCGGAGACCCCGCCGCCGCTCATTTCCTCTATGGAAGGAACTATATGAATACTGCAGAGTTAGCAGAAGTAGCTAGGGTTTTGCGTGTTGGTACTGGATCAACCAGTACCAACCTACCCGGGATGCAGCCTCAGATAAATTATCCAGTGGCTGCATCATCCCCAGGAGTTGGATTCACAATTTCAGGGCTCAATTTAAATCTAGGAGGCGGAGGAGGCGGAACAGTAGTGGCCACAACACAACCAGTTTTGCGGCCCATGCAGCCGACTCCTCCGTCCCAAACATTGGGTATGGTTCCTCATCATCAAGTTCATCATGATGTGAGTTCCAACATGATTTCTGGTGCTGAGAATGTGGGTTACGTCAATGAAATAAGCAACACAAATGGTGGTCATGGAAATAGGTTTATGGGCATGGATCATTGCATGGATCTTGATAATTACTGGCCTTCCTACTAA 1086 0.4576 MQKEKEAITANKEGTNKKDIGIMECCHGKEETLPPGFRFHPTDEELITCYLINKISDSNFSGRAITDVDLNKCEPWELPGAYSLQLLLLYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTTKDEWVVCRVFQKSAGAKKYPSSNHASRAMNPFNLEIGHHNIVPPPPMMQLGDPAAAHFLYGRNYMNTAELAEVARVLRVGTGSTSTNLPGMQPQINYPVAASSPGVGFTISGLNLNLGGGGGGTVVATTQPVLRPMQPTPPSQTLGMVPHHQVHHDVSSNMISGAENVGYVNEISNTNGGHGNRFMGMDHCMDLDNYWPSY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02738 361 ProSiteProfiles NAC domain profile. 33 172 IPR003441 GO:0003677|GO:0006355
Aip10g02738 361 Pfam No apical meristem (NAM) protein 34 151 IPR003441 GO:0003677|GO:0006355
Aip10g02738 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 358 - -
Aip10g02738 361 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 20 358 - -
Aip10g02738 361 SUPERFAMILY NAC domain 30 172 IPR036093 GO:0003677|GO:0006355
Aip10g02738 361 Gene3D NAC domain 42 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02738 Aip-Chr10 118483423 118486860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02738 29 361 NAC Transcription Factor Family AT2G24430 47.887 1.53e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip10g02738 NAM 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02738 - - gmx:100805060 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02738 10 118483423 118486860 Aip10g02738 10 118483423 118486860 ECH