Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02734 ATGGTAGCTGTGGAAACTAATCGCGTGATGGAAAGGGAACGAACCCGCAAACGCCCTCGTCTCGCGTGGGACGTGCCTCCACCACCACCACCATCCCAGCAGGCTGAAACGGGTGTGGTTGATGAAGGAATCGAAAAGAGGCACGCCTCGCCTCCAAGAAGGGACGACGATCGTGAAGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGATCGCCAAGCCAGAGAATACGTTGCTGTCAAGGTAATTAGGAGCATTCGGAAATACCGCGAAGCAGCAATGCTTGAAATTGATGTGCTTCAACGTCTGTCTAAGGGTGAAATAGGAATCTCACGCTGTGTGCAGATCCGGAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGACCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACATCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTATTTCTTCTGAATATGTAAAGCTCCCTACCCGTAAGAGGATTACCTCAGGTGAAATGCAATTCAGATGCTTGCCCAAGTCTAGTGCCATTAAGCTGATTGATTTTGGTAGTACTGCTTTTGATCATCAGATTCATAACTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATCATTCTAGGTATAGGGTGGTCCTACCCTTGTGATTTGTGGAGTGTTGGTTGTATTCTCATCGAACTATTAACGGGTGAAGCATTGTTTCAAACTCATGAAAACTTGGAACACCTGGCAATGATGGAGAGAGTGCTGGGACCTATACCCGAACACATGGTCCGACGATCTACCCGAGGAGCAGAGAAATATTTCAGGCGTGGAGCAAGACTAAATTGGCCTGAAGGAGCTGTTTCAAGGGAAAGCATCCGTGCTGTTAAGAAGCTCGATCTTCTTGAGGATATTGTATCAAGCTGTGTGGATTCTTCAAGATCATCTTTAACTGATTTGTTACATGGCTTATTGACTTATGATCCGAATGAACGCCTAACAGCTCGACAAGCCCTTGATCATCCCTTCTTTAGAAATCCAACTTAA 1212 0.4455 MVAVETNRVMERERTRKRPRLAWDVPPPPPPSQQAETGVVDEGIEKRHASPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQAREYVAVKVIRSIRKYREAAMLEIDVLQRLSKGEIGISRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELHLIHTDLKPENILLISSEYVKLPTRKRITSGEMQFRCLPKSSAIKLIDFGSTAFDHQIHNSIVSTRHYRAPEIILGIGWSYPCDLWSVGCILIELLTGEALFQTHENLEHLAMMERVLGPIPEHMVRRSTRGAEKYFRRGARLNWPEGAVSRESIRAVKKLDLLEDIVSSCVDSSRSSLTDLLHGLLTYDPNERLTARQALDHPFFRNPT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02734 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Aip10g02734 403 MobiDBLite consensus disorder prediction 7 21 - -
Aip10g02734 403 SUPERFAMILY Protein kinase-like (PK-like) 61 401 IPR011009 -
Aip10g02734 403 CDD PKc_CLK 61 399 - -
Aip10g02734 403 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Aip10g02734 403 MobiDBLite consensus disorder prediction 1 60 - -
Aip10g02734 403 ProSiteProfiles Protein kinase domain profile. 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g02734 403 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 47 400 - -
Aip10g02734 403 Pfam Protein kinase domain 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g02734 403 Gene3D Transferase(Phosphotransferase) domain 1 128 399 - -
Aip10g02734 403 SMART serkin_6 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g02734 403 PANTHER BNAA07G37640D PROTEIN 47 400 - -
Aip10g02734 403 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02734 Aip-Chr10 118438406 118442405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02734 73 401 Core Cell Cycle Gene Families AT3G48750 27.381 3.41e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Aip10g02734 Pkinase 3.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02734 K08287 - gmx:100782453 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02734 10 118438406 118442405 Aip10g02734 10 118438406 118442405 ECH