Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02706 ATGATGCTAATACCCTATATGTTCTTCGTTCTGGGGTTTACACTTATAAACATAGGAGGTGGACCTAAATGGAAAGATTTTAATTCTTCTTCTCAATTGATCATTATTGGTTCCGGTTATTTCATATTTGTTGTTGGCTACATCCTATTTATTATAGCAGACAAGTTTTTGCCTATATATTTGAGGGATAGTAGCTCATCGGAGAATAATACTATTGAGATCACAAGAAATATGAGAGTGGTTCCTTGGTTGGATGAAGATGGACATTTTATGATAACGCTTCAAAGTTTTGATTCCCAAGAGACACAAGAACTCACCGAGTTGCCTTTTAGTCGGAGTATGCGGATTGCTAGACTTGTTTTGAAGGCATTGCCGCCGGTTAAGAGCTTCGCTAAGGAGGAGGAGGAGGATGGCGACGGATTAGTCGACCGGAGAATCAATTCTTGTCCTATTTGTATTGAAGAGTTTAAGGATGGAGAGTTAATTCAACCTTTTGGAGTGTGTGTTCATGAGTTTCATGCGGCTTGTATAAACTCTTGGTTACACTCTGGAAAAACTAGTTGTCCGCTTTGTCGTGAAGATTTAGCTACTTTTATGAATTGA 603 0.3864 MMLIPYMFFVLGFTLINIGGGPKWKDFNSSSQLIIIGSGYFIFVVGYILFIIADKFLPIYLRDSSSSENNTIEITRNMRVVPWLDEDGHFMITLQSFDSQETQELTELPFSRSMRIARLVLKALPPVKSFAKEEEEDGDGLVDRRINSCPICIEEFKDGELIQPFGVCVHEFHAACINSWLHSGKTSCPLCREDLATFMN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02706 200 ProSiteProfiles Zinc finger RING-type profile. 149 192 IPR001841 -
Aip10g02706 200 Pfam Ring finger domain 147 192 IPR001841 -
Aip10g02706 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 198 IPR013083 -
Aip10g02706 200 SUPERFAMILY RING/U-box 120 197 - -
Aip10g02706 200 PANTHER OS06G0666500 PROTEIN 111 196 - -
Aip10g02706 200 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 111 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02706 Aip-Chr10 117556800 117557402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02706 138 195 C3H Transcription Factor Family AT3G10910 43.103 1.87e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02706 - - adu:107470824 376.326