Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02580 ATGGTAGCTGCTGCAGCTTCATTAGTACTGGGGATAAAATCTGAGGCAGGAGATCTTGCTGTGCTTGTGCATGAACAGGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCAGTCTCATGCAGCAACTGCACAAGCAAGATCGCAACTTGCTAAAGCTTCAAAGACTCAAAGATCAAATTCTTCTTTGGTAATATACATTGTGTAA 210 0.419 MVAAAASLVLGIKSEAGDLAVLVHEQGAMIDDIGSNIEQSHAATAQARSQLAKASKTQRSNSSLVIYIV 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02580 69 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1 54 IPR000727 -
Aip10g02580 69 PANTHER SYNTAXIN 17 66 IPR045242 -
Aip10g02580 69 SUPERFAMILY SNARE fusion complex 16 59 - -
Aip10g02580 69 Pfam SNARE domain 29 69 IPR000727 -
Aip10g02580 69 Gene3D - 7 69 - -
Aip10g02580 69 PANTHER SYNTAXIN OF PLANTS PROTEIN 17 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02580 Aip-Chr10 114085590 114087776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02580 18 69 SNARE and Associated Proteins AT5G46860 61.538 1.75e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02580 - K08488 gmx:547656 88.1965