Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02542 ATGACGACTCAACTCCTCAAGCTCAATCTCTACCCGAAATCCAACATCTCCTTCAACCACGCACCAAATCGTCATGTTCAGTTCCTTCCCCTTCTTCCCACTAATCACCGTCGCAACGACATTCACCGCAACTGCCACCGCCCGGGATTCCTCCGGTCACATTTCCTCGTATCTAACTCGTCACGCACCGAGATTGCCTCGCCGGAGCCAGCTCAGCTAAAGACTACAGACTCCCCGCTCCTGCTCGACGTCTCCGGTATGATGTGCGGCGCCTGCGTCTCACGAGTCAAGAACATCCTCTCCGCCGATGACCGAGTTGACTCGGTCGTGGTCAACATGTTAACCGAGACCGCCGCCGTCAAGCTCAGGCGGCTCGACGAGGAGAAAGATGTGGAGGAGCCGGCGACGGTTGCGGAGAGCCTGGCCCGGAGGCTGACCGAGTGCGGTTTTCCGACGAAACGAAGGGCGTCGAGTTTGGGAGTTGCAGAGAACGTCAGGAAGTGGAAGGAGCTTGTGAAGAAGAAGGAGGAACTCGTCGCCAAAAGCCGCAGCCGTGTCGCTTTTGCTTGGGCTTTGGTGGCGCTGTGCTGTGGATCTCACGCTTCGCACGTTCTTCATTCTTTGGGGATTCACATTGGTCATGGATCGGTTTTGGAAATTCTTCACAATTCATATGTGAAAGGTGGTATAGCTCTGGGGTCTCTCTTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCATTTAGGAAGGGATCACCAAACATGAACTCTCTTGTGGGATTTGGTTCTATAGCTGCTTTTATCATCAGTTCGATATCACTACTGAACCCCGGGTTGGCCTGGGATGCAACATTCTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTTCTTGGACGTTCTTTGGAGGAAAAGGCAAGGATTCAGGCATCTAGTGATATGAATGAACTCCTTTCATTGATATCTACTCAGTCAAGACTTGTGGTTACTTCATCGGAAGGTTCACCATCTACAGAGAGTGTGCTCGGTTCTAACACAATTTGCGTTGAAGTCCCAACTGATGATATCCGAGTAGGTGACTCAGTGTTGGTGTTGCCTGGAGAGACTATTCCTATAGATGGAAAGGTCATTTCAGGAAGAAGTGTTGTGGATGAATCCATGCTTACTGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCACAGTTTCTGCAGGAACTATAAATTGGGATGGACCTTTAAGGATTGAAGCTTCTTCATCTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCCCAGTCACGTGAAGCACCTGTACAGAGGCTTGCTGATTCCATAGCAGGGCCATTTGTATACAGCGTAATGACTATGTCAGCAGCAACATTTGCATTTTGGTACTATATTGGATCAAACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGGGATCCTTTGCTTTTGAGTTTAAAGCTTGCTGTAGATGTTTTGGTTGTCTCTTGCCCTTGTGCACTGGGTCTTGCCACACCTACAGCGATCTTGGTTGGCACCTCCCTTGGGGCAAGAAAAGGACTTCTTATTAGAGGGGGAGATGTGCTAGAACGCTTGGCCAGTATAAATTATATTGCCCTTGACAAGACCGGAACCCTCACCAAAGGAAAACCAGTTGTCTCCTCGGTGAGCTCTATTAATTATGGAGAATCAGAAATACTTCAGATTGCTGCTGCGGTGGAGAAAACAGCATCTCATCCAATTGCAAAGGCTATTATCAATAAAGCTGAGTCATTAGAGCTGGTCCTTCCAGTTACACAAGGGCAATTGGTAGAACCAGGCTTTGGAACATTGGCAGAAATAGATGGGCGTTTAGTTGCAGTTGGATCTTTAGAATGGGTCCATGATCGCTTCCAGATTAAAATGAACCCCTCTGATTTATTGAATCTCGAACATACTTTGATGAATCATTCATCAGAGACATCTTCAAACTATTCAAAAACTGTTGTCTATGTTGGACGTGAGGAAGAAGGCATCATTGGTTCTATTACCATATCTGACGTTGTACGTGAAGATGCTCAATCTACCGTAGCAAGACTCAAGCAGAAGGGGATTGAAATGGTCCTGTTATCAGGAGACAGGGAAGAGGCAGTTGCAACTGTAGCACAGACAGTTGGGATTGGAAGCGATTTTATGAAAGCATCATTGTCCCCACAGCAGAAATCTAAGTTTATTTCATCTTTGAAAGCTTCTGGACATCATGTTGCAATGGTTGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTACAAAATGAAGCTCAAGAGAACGCTGCCTCTGATGCTGCATCCATTATACTTCTTGGAAACAAAATTTCTCATGTTGTTGATGCACTAGACCTCGCACAGGCAACCATGGGAAAAGTGTACCAAAATTTATCTTGGGCGGTAGCCTACAACGTTGTTGCCATTCCCATTGCTGCTGGAGTGTTACTTCCCCAATTTGAATTTGCCATGACACCTTCACTATCAGGAGGGTTGATGGCTTTGAGCTCCATCTTCGTGGTTGGCAACTCGTTGCTTCTACAACTTCATGGGTCTCAGACCTCCAAAAAGGTCGCATAA 2667 0.4702 MTTQLLKLNLYPKSNISFNHAPNRHVQFLPLLPTNHRRNDIHRNCHRPGFLRSHFLVSNSSRTEIASPEPAQLKTTDSPLLLDVSGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRLDEEKDVEEPATVAESLARRLTECGFPTKRRASSLGVAENVRKWKELVKKKEELVAKSRSRVAFAWALVALCCGSHASHVLHSLGIHIGHGSVLEILHNSYVKGGIALGSLLGPGRELLFDGLNAFRKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDATFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVVTSSEGSPSTESVLGSNTICVEVPTDDIRVGDSVLVLPGETIPIDGKVISGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIEASSSGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTMSAATFAFWYYIGSNIFPDVLLNDIAGPEGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTKGKPVVSSVSSINYGESEILQIAAAVEKTASHPIAKAIINKAESLELVLPVTQGQLVEPGFGTLAEIDGRLVAVGSLEWVHDRFQIKMNPSDLLNLEHTLMNHSSETSSNYSKTVVYVGREEEGIIGSITISDVVREDAQSTVARLKQKGIEMVLLSGDREEAVATVAQTVGIGSDFMKASLSPQQKSKFISSLKASGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISHVVDALDLAQATMGKVYQNLSWAVAYNVVAIPIAAGVLLPQFEFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQTSKKVA 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02542 888 ProSiteProfiles Heavy-metal-associated domain profile. 79 154 IPR006121 GO:0046872
Aip10g02542 888 Pfam haloacid dehalogenase-like hydrolase 549 779 - -
Aip10g02542 888 SFLD p-type atpase 536 818 IPR044492 -
Aip10g02542 888 SFLD C1.7: P-type atpase like 536 818 - -
Aip10g02542 888 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 347 857 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip10g02542 888 PANTHER ATP7, ISOFORM B 77 878 - -
Aip10g02542 888 ProSitePatterns E1-E2 ATPases phosphorylation site. 555 561 IPR018303 -
Aip10g02542 888 SUPERFAMILY Calcium ATPase, transmembrane domain M 289 547 IPR023298 -
Aip10g02542 888 Gene3D - 564 696 IPR023299 GO:0000166
Aip10g02542 888 SUPERFAMILY HMA, heavy metal-associated domain 81 122 IPR036163 GO:0046872
Aip10g02542 888 SUPERFAMILY Calcium ATPase, transduction domain A 347 436 IPR008250 -
Aip10g02542 888 CDD HMA 82 151 IPR006121 GO:0046872
Aip10g02542 888 SUPERFAMILY HAD-like 551 873 IPR036412 -
Aip10g02542 888 Gene3D - 309 440 - -
Aip10g02542 888 PRINTS P-type cation-transporting ATPase superfamily signature 553 567 - -
Aip10g02542 888 PRINTS P-type cation-transporting ATPase superfamily signature 765 784 - -
Aip10g02542 888 PRINTS P-type cation-transporting ATPase superfamily signature 710 720 - -
Aip10g02542 888 PRINTS P-type cation-transporting ATPase superfamily signature 386 400 - -
Aip10g02542 888 PRINTS P-type cation-transporting ATPase superfamily signature 688 699 - -
Aip10g02542 888 Pfam E1-E2 ATPase 338 533 - -
Aip10g02542 888 Gene3D - 73 156 - -
Aip10g02542 888 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 257 876 IPR027256 GO:0006812|GO:0016021|GO:0019829
Aip10g02542 888 Pfam Heavy-metal-associated domain 82 150 IPR006121 GO:0046872
Aip10g02542 888 CDD P-type_ATPase_HM 185 875 - -
Aip10g02542 888 Gene3D - 544 816 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02542 Aip-Chr10 112593831 112603612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02542 248 877 Primary Pumps ATPases AT1G63440 36.973 1.57e-115 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02542 K17686 - gmx:100127402 1416.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02542 10 112593831 112603612 Aip10g02542 10 112593831 112603612 ECH