Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02519 ATGGATTCATCAAACCAGAACCAACCTTGTCCCAACCGAACTTTTAATCACTTATACACAGAACCTTGTGCTGAGGAATCAGAATCAGGTTCACTCCCTTCCGAGACACCCCAGACCATGGACCCTAGAGGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAACACAATAGCAGTATTGGATACAGGTGCTGGTAAGACCTTAATAGCTGTGTTGCTTATGAAGAACATTGGTCAAGCTATCAGGTCCAGTGGCTCGAAAAAGTTGATTATTTTCTTAGCTCCAACCGTTCATCTTGTCAACCAGCAATATAAGAATATAAAAGATCTTACAGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGACGCATGGGATTTAAGTATCTGGGAGAAGGAAATTAGTGAAAATGAGGTACTGGTTATGACACCCCAGCTTCTTTTGGACGCTCTAAGAAAGGCTTTCTTGAAGATGGAATCAATATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTCTATCACAAGGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCATCACCAGTAGGTAAAAAAGGTGTTTCCTCTTCTGTGGATTGTGAGGGTCAGATATCAGAACTGGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACCGAGATGGAGGTATATATACCTTCTGCAAAAGAAAGTTGTAGATATTATGACCAGGCACAATTCCCTGATTTGAATTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGGTGCATTGTTATCGGAATTACAAAGCTCAACTGATGGTAACTCTAAGGATGTGGAGAATAAATTAAATACGCTGCATAAGCGGATGTCCAATGAACTTGCAAGAGTCTTGTATTGCCTTGAAGATCTTGGCCTCCTATGTGCTTATGAGGCTGTTAAAATATGGCATGAAAATTTCTCCAAAGTCGAAGGAGAGTGTGAAGTTTACCGAAAAGGTTTTAGTCAGTGCAAAGCATTCATTGACGTAGTCATGCAAATAGTTGAAGAATCCCTCCATCTTGATGATAACAAGATTCCAGAGCTTGATCTTAATTTTTCAAAGGCAGTAGACCTGGGATACTTATCTCCCAAATTACTTGAACTTATTAAACTCTTCCAGTCATTTGGACATTCATGTGAGGTATTGTGCCTTGTTTTTGTCGAAAGAATCATCACAGCAAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTTACAGTTTCCTATTTAACCGGAAACAATACGTCAGCTGGTTCACTGACTGCTAAGAAGCAGAAGGAAACATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACAACCGAGGTAATTGAGGAAGGAATTCATGTGCCAAAGTGCTCATGTGTGATACGTTTTGACCTACCGAACACATGTCGCAGTTATGTCCAGTCTCGGGGAAGATCTAGGCAGGATGACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACATGGATCAAAGAAATAAACTGTTTGACATCATCAGGAGTGAGCGATCCGTGACTGAAGCGGCTATATATAAAGAAGATCATGCTTCTAATTTAAGGGTGATTACGGAAGTAAAATCAAATATATATTATGTTGAGTCTACTGGAGCATCAGTCAACTTGGACTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACCCCCGTGCAAAGCCCAATTTTGAATTCCTGCCTTTTGAAGGGGCATACAGGTGTAAATTAACATTACCACCTAATGCAGCTTTCCAAACAATAGTCGGTCCCTTGGGTAAAGATGTCCGTTTGGCAAGGAATCTTGTCTGTTTAGAAGCTTGTAAGAAGCTGCATCAGATGCATGCCTTGAATGATCATCTTGTCCCTTTCACTGAAAAGCCTCCAGAAGCTGAACATAGTGTGCAAAACCAAGAATCTGGTACAGGATCAGGTGCAGGAACCACAAGAAGAAAAGAATTACATGGCACAGCCAGCATTCGAGCTTTATGTGGTACAATTGAAGACAAACTAGACGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCGGTGAAATCTTCTCAGGATTTGTTCTCCTGATTGAGTCAAAGTTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATAAAAAAAACCGTAAAGGCTTCCTTATCTTTCTGTGGACAAGTTTATTTGAATGCTGAACAGATGATGTATGCAAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATAAGTCCAAATCAGTAAAAGGAGAGAGGGAATTCTTGCTTCAGAAAGACACAAAATCACTGTGGAGTCCACACTTCTATTTGCTTCTACCACTACAAAAAGGGGATGATGAATCTAAAGGATCTTTGGAAATAAATTGGTCTGGAATAAGTTCTTGTGCTCCTGCAGTTGAATTTTTAAGGAACAAGTTTTCACTGGTTGCTGGAGATTATGATGGGGGCAGTAAAATTGTGTCACCTTGTGATGCTAATTCATCAAAGGTGGCCTGTGAAGGCACAGATAAAATTCACTTTGCCAATTGTGTAGTTGATGCTAACAGTATAAAGAATCGGGTAGTTTTGGCTATTCACACTGGAAGAATGTATTGTATTCTTGAAGCAGATAACAAGCTATGCGCTGAAAGACAACCTTTATTACGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGGATAAGTCATCGCAAATTGGCCCAGCAAACACCAAAATGCCTGCGCATGTTCACATTCCACCTGAGCTTTTATTTATTCTTGATGTTAAAAGACATGTTTTAAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCTCTCACGTTGTCCAGTCAGCTTAGACGAGAGATAGATGGTCAGAGTAGCAATATCAGCATACCTAGCTCTCTGATTCTAGAAGCACTGACAACCTTAAGATGCTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTCTTAAGTTTGTAGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGGAACATGAAGGAAAATTATCTGATAGACGGAAGTGGGCTGTTTGTAATTCAACTCTGCATAAACTGGGAATAAATCGCAAATTACAGGGCTATATCCAAGATTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACATGTTGTTTCTTGTGAATGTGGGGTGGAAACCCCAGAAGTTCCTGTGGATGGAAAATTCCAGACTGAAGATCCAAAAGTTGTGGTCGGAAAGCTTTGTGACCAGGGTCACCGCTGGATGTGTTCAAAGACAATTTCTGATTGTGTTGAAGCTCTTATAGGAGCATACTATGTAGTTGGCGGATTGATTGCTGCACTACATGTCATGAAGTGGCTTGGCATTGATTCTGAGCTAGAACCGTCCTTGGTTGAGGAAGCCATTGCTGCTGCATCTCTCCATACATATGCACCAAAACAAGACGAGATTGCAACCCTTGAAATGAAAATTGGGTATAAATTTTCTGTTAAGGGACTCTTACTGGAGGCAATGACACATGTATCTGAGGCTGAACTTGGGATTGGTTGCTGCTACGAGAGGCTTGAATTTCTCGGCGACTCTGTATTGGATCTTCTTATTACATGGCATCTTTATCAGAGCCATAAAGATATTGATCCAGGAGAGCTGACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACGAAACCTTTACCCACACCTTCTGCTCAGCTCTGGAGATTTGGTGAGCCAGATATCAGAATATGTTAAGGTCATTTCTGAATCAGAGAGCAGTACCAGATCACTCCCAGGCATTAAAGCCCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAGTTGATACCAAGCTCAATCTTGATGAAGTGTGGAGAATTTTCAATCCTCTGTTGTCTCCCATTGTTACCCCTGATAAACTTGAATTGCCTCCGTTGCGTGAACTAATTGAATTATGTGGCTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACTGTGCATGCTGAGCTTAGTGTACAACTGGAAAACACACTCTTAGTTCGGAAGGGAAACGGAATGACTAAAAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGAAAGATCTCAAGAAGAAGGGAATTTCACATGGCAGTAGCGTGCCAAAGAGAAAAAGAGAGAATCCTGACTATCTATGCGATTCGTCTAATCCAGAAACCAATATTGGTATTTGCACTGCTCTAACAGATGGACATTCGTCAAAGACAGTAGCGAATAAGAGGGCGAAAGTGGATGAAACTAACACAGAAGAAATTGCATCTGCTGTTTCTTTGCCCCACAAAGACTCATCTCCTGAGGACTCTGATTCCATTCCAGTTATTGCATCTATCAATATGAAGAAAGGAGGACCCCGAACCACACTATATGAACTGTGCAAGAGATTACAGTGGCCATTGCCAGAATATGATTCAACAGAGTATAAAGATAGATCCCTGTTTGAATCCAGCGAAGGCCTGGAAGGAACAAAGGGAGTCAACTGCTTTGTGTCAAAAATAACCTTGTGCATACCGAATGATGGTAATATAGAATGCACAGGAGAAGCTAGAGCTGATAAGAAGAGTTCATATGACTCTGCTGCAGTTAAAATACTTCATGAGCTGCAACGACTGGGGAAGCTTAAGATTGATGATGCTTAG 4944 0.4015 MDSSNQNQPCPNRTFNHLYTEPCAEESESGSLPSETPQTMDPRGYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLMKNIGQAIRSSGSKKLIIFLAPTVHLVNQQYKNIKDLTDFQVQEYYGAKGVDAWDLSIWEKEISENEVLVMTPQLLLDALRKAFLKMESICLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSSVDCEGQISELESILDSRRYTVEDRTEMEVYIPSAKESCRYYDQAQFPDLNLKPKIEDLWSKSGALLSELQSSTDGNSKDVENKLNTLHKRMSNELARVLYCLEDLGLLCAYEAVKIWHENFSKVEGECEVYRKGFSQCKAFIDVVMQIVEESLHLDDNKIPELDLNFSKAVDLGYLSPKLLELIKLFQSFGHSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKETLDSFRSGKVNILFTTEVIEEGIHVPKCSCVIRFDLPNTCRSYVQSRGRSRQDDSQFIVMLERGNMDQRNKLFDIIRSERSVTEAAIYKEDHASNLRVITEVKSNIYYVESTGASVNLDSSVSLLNRYCEKLPCDEYPRAKPNFEFLPFEGAYRCKLTLPPNAAFQTIVGPLGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEKPPEAEHSVQNQESGTGSGAGTTRRKELHGTASIRALCGTIEDKLDGAKFYAYRFDFKCSIVGEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGQVYLNAEQMMYAKCFHEVFFNGLFGRLVHKSKSVKGEREFLLQKDTKSLWSPHFYLLLPLQKGDDESKGSLEINWSGISSCAPAVEFLRNKFSLVAGDYDGGSKIVSPCDANSSKVACEGTDKIHFANCVVDANSIKNRVVLAIHTGRMYCILEADNKLCAERQPLLRLKQSHNAHNVLLNFYEEDEKDKSSQIGPANTKMPAHVHIPPELLFILDVKRHVLKSMYLLPSLMHRLESLTLSSQLRREIDGQSSNISIPSSLILEALTTLRCCENFSMERLELLGDSVLKFVVSCHLFLKYPKEHEGKLSDRRKWAVCNSTLHKLGINRKLQGYIQDSAFEPRRWVAPGQRSIHVVSCECGVETPEVPVDGKFQTEDPKVVVGKLCDQGHRWMCSKTISDCVEALIGAYYVVGGLIAALHVMKWLGIDSELEPSLVEEAIAAASLHTYAPKQDEIATLEMKIGYKFSVKGLLLEAMTHVSEAELGIGCCYERLEFLGDSVLDLLITWHLYQSHKDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLLSSGDLVSQISEYVKVISESESSTRSLPGIKAPKALGDLVESIAGAILVDTKLNLDEVWRIFNPLLSPIVTPDKLELPPLRELIELCGSLGYFIKENCKRKGTTVHAELSVQLENTLLVRKGNGMTKKIAKGEAAFHLLKDLKKKGISHGSSVPKRKRENPDYLCDSSNPETNIGICTALTDGHSSKTVANKRAKVDETNTEEIASAVSLPHKDSSPEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEYDSTEYKDRSLFESSEGLEGTKGVNCFVSKITLCIPNDGNIECTGEARADKKSSYDSAAVKILHELQRLGKLKIDDA 1647
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02519 1647 MobiDBLite consensus disorder prediction 669 691 - -
Aip10g02519 1647 Pfam Ribonuclease III domain 1048 1182 IPR000999 GO:0004525|GO:0006396
Aip10g02519 1647 Pfam Ribonuclease III domain 1260 1368 IPR000999 GO:0004525|GO:0006396
Aip10g02519 1647 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 582 672 IPR005034 GO:0016891
Aip10g02519 1647 SMART helicmild6 424 514 IPR001650 -
Aip10g02519 1647 Pfam Dicer dimerisation domain 582 668 - -
Aip10g02519 1647 SUPERFAMILY RNase III domain-like 1028 1199 IPR036389 GO:0004525|GO:0006396
Aip10g02519 1647 PANTHER DICER-RELATED 933 1641 - -
Aip10g02519 1647 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 933 1641 - -
Aip10g02519 1647 Gene3D - 1559 1638 - -
Aip10g02519 1647 Gene3D - 388 547 IPR027417 -
Aip10g02519 1647 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 25 932 - -
Aip10g02519 1647 PANTHER DICER-RELATED 25 932 - -
Aip10g02519 1647 CDD RIBOc 1030 1194 IPR000999 GO:0004525|GO:0006396
Aip10g02519 1647 SMART ultradead3 38 237 IPR014001 -
Aip10g02519 1647 Pfam Type III restriction enzyme, res subunit 53 206 IPR006935 GO:0003677|GO:0005524|GO:0016787
Aip10g02519 1647 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Aip10g02519 1647 Pfam Helicase conserved C-terminal domain 413 511 IPR001650 -
Aip10g02519 1647 Gene3D - 36 274 IPR027417 -
Aip10g02519 1647 CDD SF2_C_dicer 390 522 - -
Aip10g02519 1647 CDD RIBOc 1240 1390 IPR000999 GO:0004525|GO:0006396
Aip10g02519 1647 SUPERFAMILY RNase III domain-like 1223 1389 IPR036389 GO:0004525|GO:0006396
Aip10g02519 1647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 530 IPR027417 -
Aip10g02519 1647 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 206 IPR014001 -
Aip10g02519 1647 ProSiteProfiles Ribonuclease III family domain profile. 1011 1183 IPR000999 GO:0004525|GO:0006396
Aip10g02519 1647 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 552 IPR001650 -
Aip10g02519 1647 SMART riboneu5 1239 1392 IPR000999 GO:0004525|GO:0006396
Aip10g02519 1647 SMART riboneu5 1030 1203 IPR000999 GO:0004525|GO:0006396
Aip10g02519 1647 Gene3D Ribonuclease III domain 1012 1194 IPR036389 GO:0004525|GO:0006396
Aip10g02519 1647 Gene3D Ribonuclease III domain 1220 1391 IPR036389 GO:0004525|GO:0006396
Aip10g02519 1647 CDD DEXHc_dicer 42 238 - -
Aip10g02519 1647 ProSitePatterns Ribonuclease III family signature. 1260 1268 IPR000999 GO:0004525|GO:0006396
Aip10g02519 1647 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1426 1461 IPR014720 -
Aip10g02519 1647 ProSiteProfiles Ribonuclease III family domain profile. 1224 1369 IPR000999 GO:0004525|GO:0006396
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip10g02519 Aip-Chr10 111837520 111848087 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02519 438 511 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 4.14e-07 52.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02519 K11592 - gmx:100806831 2276.13
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02519 10 111837520 111848087 Aip10g02519 10 111837520 111848087 ECH