Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip10g02519 | ATGGATTCATCAAACCAGAACCAACCTTGTCCCAACCGAACTTTTAATCACTTATACACAGAACCTTGTGCTGAGGAATCAGAATCAGGTTCACTCCCTTCCGAGACACCCCAGACCATGGACCCTAGAGGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAACACAATAGCAGTATTGGATACAGGTGCTGGTAAGACCTTAATAGCTGTGTTGCTTATGAAGAACATTGGTCAAGCTATCAGGTCCAGTGGCTCGAAAAAGTTGATTATTTTCTTAGCTCCAACCGTTCATCTTGTCAACCAGCAATATAAGAATATAAAAGATCTTACAGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGACGCATGGGATTTAAGTATCTGGGAGAAGGAAATTAGTGAAAATGAGGTACTGGTTATGACACCCCAGCTTCTTTTGGACGCTCTAAGAAAGGCTTTCTTGAAGATGGAATCAATATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTCTATCACAAGGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCATCACCAGTAGGTAAAAAAGGTGTTTCCTCTTCTGTGGATTGTGAGGGTCAGATATCAGAACTGGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACCGAGATGGAGGTATATATACCTTCTGCAAAAGAAAGTTGTAGATATTATGACCAGGCACAATTCCCTGATTTGAATTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGGTGCATTGTTATCGGAATTACAAAGCTCAACTGATGGTAACTCTAAGGATGTGGAGAATAAATTAAATACGCTGCATAAGCGGATGTCCAATGAACTTGCAAGAGTCTTGTATTGCCTTGAAGATCTTGGCCTCCTATGTGCTTATGAGGCTGTTAAAATATGGCATGAAAATTTCTCCAAAGTCGAAGGAGAGTGTGAAGTTTACCGAAAAGGTTTTAGTCAGTGCAAAGCATTCATTGACGTAGTCATGCAAATAGTTGAAGAATCCCTCCATCTTGATGATAACAAGATTCCAGAGCTTGATCTTAATTTTTCAAAGGCAGTAGACCTGGGATACTTATCTCCCAAATTACTTGAACTTATTAAACTCTTCCAGTCATTTGGACATTCATGTGAGGTATTGTGCCTTGTTTTTGTCGAAAGAATCATCACAGCAAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTTACAGTTTCCTATTTAACCGGAAACAATACGTCAGCTGGTTCACTGACTGCTAAGAAGCAGAAGGAAACATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACAACCGAGGTAATTGAGGAAGGAATTCATGTGCCAAAGTGCTCATGTGTGATACGTTTTGACCTACCGAACACATGTCGCAGTTATGTCCAGTCTCGGGGAAGATCTAGGCAGGATGACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACATGGATCAAAGAAATAAACTGTTTGACATCATCAGGAGTGAGCGATCCGTGACTGAAGCGGCTATATATAAAGAAGATCATGCTTCTAATTTAAGGGTGATTACGGAAGTAAAATCAAATATATATTATGTTGAGTCTACTGGAGCATCAGTCAACTTGGACTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACCCCCGTGCAAAGCCCAATTTTGAATTCCTGCCTTTTGAAGGGGCATACAGGTGTAAATTAACATTACCACCTAATGCAGCTTTCCAAACAATAGTCGGTCCCTTGGGTAAAGATGTCCGTTTGGCAAGGAATCTTGTCTGTTTAGAAGCTTGTAAGAAGCTGCATCAGATGCATGCCTTGAATGATCATCTTGTCCCTTTCACTGAAAAGCCTCCAGAAGCTGAACATAGTGTGCAAAACCAAGAATCTGGTACAGGATCAGGTGCAGGAACCACAAGAAGAAAAGAATTACATGGCACAGCCAGCATTCGAGCTTTATGTGGTACAATTGAAGACAAACTAGACGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCGGTGAAATCTTCTCAGGATTTGTTCTCCTGATTGAGTCAAAGTTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATAAAAAAAACCGTAAAGGCTTCCTTATCTTTCTGTGGACAAGTTTATTTGAATGCTGAACAGATGATGTATGCAAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATAAGTCCAAATCAGTAAAAGGAGAGAGGGAATTCTTGCTTCAGAAAGACACAAAATCACTGTGGAGTCCACACTTCTATTTGCTTCTACCACTACAAAAAGGGGATGATGAATCTAAAGGATCTTTGGAAATAAATTGGTCTGGAATAAGTTCTTGTGCTCCTGCAGTTGAATTTTTAAGGAACAAGTTTTCACTGGTTGCTGGAGATTATGATGGGGGCAGTAAAATTGTGTCACCTTGTGATGCTAATTCATCAAAGGTGGCCTGTGAAGGCACAGATAAAATTCACTTTGCCAATTGTGTAGTTGATGCTAACAGTATAAAGAATCGGGTAGTTTTGGCTATTCACACTGGAAGAATGTATTGTATTCTTGAAGCAGATAACAAGCTATGCGCTGAAAGACAACCTTTATTACGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGGATAAGTCATCGCAAATTGGCCCAGCAAACACCAAAATGCCTGCGCATGTTCACATTCCACCTGAGCTTTTATTTATTCTTGATGTTAAAAGACATGTTTTAAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCTCTCACGTTGTCCAGTCAGCTTAGACGAGAGATAGATGGTCAGAGTAGCAATATCAGCATACCTAGCTCTCTGATTCTAGAAGCACTGACAACCTTAAGATGCTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTCTTAAGTTTGTAGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGGAACATGAAGGAAAATTATCTGATAGACGGAAGTGGGCTGTTTGTAATTCAACTCTGCATAAACTGGGAATAAATCGCAAATTACAGGGCTATATCCAAGATTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACATGTTGTTTCTTGTGAATGTGGGGTGGAAACCCCAGAAGTTCCTGTGGATGGAAAATTCCAGACTGAAGATCCAAAAGTTGTGGTCGGAAAGCTTTGTGACCAGGGTCACCGCTGGATGTGTTCAAAGACAATTTCTGATTGTGTTGAAGCTCTTATAGGAGCATACTATGTAGTTGGCGGATTGATTGCTGCACTACATGTCATGAAGTGGCTTGGCATTGATTCTGAGCTAGAACCGTCCTTGGTTGAGGAAGCCATTGCTGCTGCATCTCTCCATACATATGCACCAAAACAAGACGAGATTGCAACCCTTGAAATGAAAATTGGGTATAAATTTTCTGTTAAGGGACTCTTACTGGAGGCAATGACACATGTATCTGAGGCTGAACTTGGGATTGGTTGCTGCTACGAGAGGCTTGAATTTCTCGGCGACTCTGTATTGGATCTTCTTATTACATGGCATCTTTATCAGAGCCATAAAGATATTGATCCAGGAGAGCTGACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACGAAACCTTTACCCACACCTTCTGCTCAGCTCTGGAGATTTGGTGAGCCAGATATCAGAATATGTTAAGGTCATTTCTGAATCAGAGAGCAGTACCAGATCACTCCCAGGCATTAAAGCCCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAGTTGATACCAAGCTCAATCTTGATGAAGTGTGGAGAATTTTCAATCCTCTGTTGTCTCCCATTGTTACCCCTGATAAACTTGAATTGCCTCCGTTGCGTGAACTAATTGAATTATGTGGCTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACTGTGCATGCTGAGCTTAGTGTACAACTGGAAAACACACTCTTAGTTCGGAAGGGAAACGGAATGACTAAAAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGAAAGATCTCAAGAAGAAGGGAATTTCACATGGCAGTAGCGTGCCAAAGAGAAAAAGAGAGAATCCTGACTATCTATGCGATTCGTCTAATCCAGAAACCAATATTGGTATTTGCACTGCTCTAACAGATGGACATTCGTCAAAGACAGTAGCGAATAAGAGGGCGAAAGTGGATGAAACTAACACAGAAGAAATTGCATCTGCTGTTTCTTTGCCCCACAAAGACTCATCTCCTGAGGACTCTGATTCCATTCCAGTTATTGCATCTATCAATATGAAGAAAGGAGGACCCCGAACCACACTATATGAACTGTGCAAGAGATTACAGTGGCCATTGCCAGAATATGATTCAACAGAGTATAAAGATAGATCCCTGTTTGAATCCAGCGAAGGCCTGGAAGGAACAAAGGGAGTCAACTGCTTTGTGTCAAAAATAACCTTGTGCATACCGAATGATGGTAATATAGAATGCACAGGAGAAGCTAGAGCTGATAAGAAGAGTTCATATGACTCTGCTGCAGTTAAAATACTTCATGAGCTGCAACGACTGGGGAAGCTTAAGATTGATGATGCTTAG | 4944 | 0.4015 | MDSSNQNQPCPNRTFNHLYTEPCAEESESGSLPSETPQTMDPRGYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLMKNIGQAIRSSGSKKLIIFLAPTVHLVNQQYKNIKDLTDFQVQEYYGAKGVDAWDLSIWEKEISENEVLVMTPQLLLDALRKAFLKMESICLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSSVDCEGQISELESILDSRRYTVEDRTEMEVYIPSAKESCRYYDQAQFPDLNLKPKIEDLWSKSGALLSELQSSTDGNSKDVENKLNTLHKRMSNELARVLYCLEDLGLLCAYEAVKIWHENFSKVEGECEVYRKGFSQCKAFIDVVMQIVEESLHLDDNKIPELDLNFSKAVDLGYLSPKLLELIKLFQSFGHSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKETLDSFRSGKVNILFTTEVIEEGIHVPKCSCVIRFDLPNTCRSYVQSRGRSRQDDSQFIVMLERGNMDQRNKLFDIIRSERSVTEAAIYKEDHASNLRVITEVKSNIYYVESTGASVNLDSSVSLLNRYCEKLPCDEYPRAKPNFEFLPFEGAYRCKLTLPPNAAFQTIVGPLGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEKPPEAEHSVQNQESGTGSGAGTTRRKELHGTASIRALCGTIEDKLDGAKFYAYRFDFKCSIVGEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGQVYLNAEQMMYAKCFHEVFFNGLFGRLVHKSKSVKGEREFLLQKDTKSLWSPHFYLLLPLQKGDDESKGSLEINWSGISSCAPAVEFLRNKFSLVAGDYDGGSKIVSPCDANSSKVACEGTDKIHFANCVVDANSIKNRVVLAIHTGRMYCILEADNKLCAERQPLLRLKQSHNAHNVLLNFYEEDEKDKSSQIGPANTKMPAHVHIPPELLFILDVKRHVLKSMYLLPSLMHRLESLTLSSQLRREIDGQSSNISIPSSLILEALTTLRCCENFSMERLELLGDSVLKFVVSCHLFLKYPKEHEGKLSDRRKWAVCNSTLHKLGINRKLQGYIQDSAFEPRRWVAPGQRSIHVVSCECGVETPEVPVDGKFQTEDPKVVVGKLCDQGHRWMCSKTISDCVEALIGAYYVVGGLIAALHVMKWLGIDSELEPSLVEEAIAAASLHTYAPKQDEIATLEMKIGYKFSVKGLLLEAMTHVSEAELGIGCCYERLEFLGDSVLDLLITWHLYQSHKDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLLSSGDLVSQISEYVKVISESESSTRSLPGIKAPKALGDLVESIAGAILVDTKLNLDEVWRIFNPLLSPIVTPDKLELPPLRELIELCGSLGYFIKENCKRKGTTVHAELSVQLENTLLVRKGNGMTKKIAKGEAAFHLLKDLKKKGISHGSSVPKRKRENPDYLCDSSNPETNIGICTALTDGHSSKTVANKRAKVDETNTEEIASAVSLPHKDSSPEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEYDSTEYKDRSLFESSEGLEGTKGVNCFVSKITLCIPNDGNIECTGEARADKKSSYDSAAVKILHELQRLGKLKIDDA | 1647 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip10g02519 | 1647 | MobiDBLite | consensus disorder prediction | 669 | 691 | - | - | |
Aip10g02519 | 1647 | Pfam | Ribonuclease III domain | 1048 | 1182 | IPR000999 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | Pfam | Ribonuclease III domain | 1260 | 1368 | IPR000999 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | ProSiteProfiles | Dicer double-stranded RNA-binding fold domain profile. | 582 | 672 | IPR005034 | GO:0016891 | |
Aip10g02519 | 1647 | SMART | helicmild6 | 424 | 514 | IPR001650 | - | |
Aip10g02519 | 1647 | Pfam | Dicer dimerisation domain | 582 | 668 | - | - | |
Aip10g02519 | 1647 | SUPERFAMILY | RNase III domain-like | 1028 | 1199 | IPR036389 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | PANTHER | DICER-RELATED | 933 | 1641 | - | - | |
Aip10g02519 | 1647 | PANTHER | ENDORIBONUCLEASE DICER HOMOLOG 3 | 933 | 1641 | - | - | |
Aip10g02519 | 1647 | Gene3D | - | 1559 | 1638 | - | - | |
Aip10g02519 | 1647 | Gene3D | - | 388 | 547 | IPR027417 | - | |
Aip10g02519 | 1647 | PANTHER | ENDORIBONUCLEASE DICER HOMOLOG 3 | 25 | 932 | - | - | |
Aip10g02519 | 1647 | PANTHER | DICER-RELATED | 25 | 932 | - | - | |
Aip10g02519 | 1647 | CDD | RIBOc | 1030 | 1194 | IPR000999 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | SMART | ultradead3 | 38 | 237 | IPR014001 | - | |
Aip10g02519 | 1647 | Pfam | Type III restriction enzyme, res subunit | 53 | 206 | IPR006935 | GO:0003677|GO:0005524|GO:0016787 | |
Aip10g02519 | 1647 | Gene3D | Dicer dimerisation domain | 577 | 674 | IPR038248 | - | |
Aip10g02519 | 1647 | Pfam | Helicase conserved C-terminal domain | 413 | 511 | IPR001650 | - | |
Aip10g02519 | 1647 | Gene3D | - | 36 | 274 | IPR027417 | - | |
Aip10g02519 | 1647 | CDD | SF2_C_dicer | 390 | 522 | - | - | |
Aip10g02519 | 1647 | CDD | RIBOc | 1240 | 1390 | IPR000999 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | SUPERFAMILY | RNase III domain-like | 1223 | 1389 | IPR036389 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 89 | 530 | IPR027417 | - | |
Aip10g02519 | 1647 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 49 | 206 | IPR014001 | - | |
Aip10g02519 | 1647 | ProSiteProfiles | Ribonuclease III family domain profile. | 1011 | 1183 | IPR000999 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 394 | 552 | IPR001650 | - | |
Aip10g02519 | 1647 | SMART | riboneu5 | 1239 | 1392 | IPR000999 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | SMART | riboneu5 | 1030 | 1203 | IPR000999 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | Gene3D | Ribonuclease III domain | 1012 | 1194 | IPR036389 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | Gene3D | Ribonuclease III domain | 1220 | 1391 | IPR036389 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | CDD | DEXHc_dicer | 42 | 238 | - | - | |
Aip10g02519 | 1647 | ProSitePatterns | Ribonuclease III family signature. | 1260 | 1268 | IPR000999 | GO:0004525|GO:0006396 | |
Aip10g02519 | 1647 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1426 | 1461 | IPR014720 | - | |
Aip10g02519 | 1647 | ProSiteProfiles | Ribonuclease III family domain profile. | 1224 | 1369 | IPR000999 | GO:0004525|GO:0006396 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip10g02519 | Aip-Chr10 | 111837520 | 111848087 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip10g02519 | 438 | 511 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 37.838 | 4.14e-07 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip10g02519 | K11592 | - | gmx:100806831 | 2276.13 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip10g02519 | 10 | 111837520 | 111848087 | Aip10g02519 | 10 | 111837520 | 111848087 | ECH |