Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02509 ATGGATGAAGCAGTGGTTGAAAATTTTTTTTCTCTAAAATCGACGAACTGGAGACCAGAGTTTAGAGTAAGTCACGATTATGGAGAGAGGCAGATAGCAGAGCTTCTTCTTCTTCTTCTTCTTCTCCTCTGCCGAGCTCGCCGTCGCGCCATCCTCTTCATATTCGTCGTTGCAACGTCTTTGCCGGGAGCTGTCGCTGTGAGCCTGTCGCCAGAGCATGTCGCCGTCGCAGCTTCTTTTGAGTATGCAAATCATTACTCTTCCCTTGGTGTTCTTGTGAATGATGTGTACCTTCTGAACTTCACAAATGGAATCCAACTGAGAGTTAGAATGACACTTGGATGTGGATATGATCATCTATTTCAAGAGCATTCATACCATCCATTGGATGGAATGCTTGGTCTTGGAAGGGGAAGATCAAGCTTGGTTTCACAGCTTAATAGTCAGGGTTTGTTAAATAAGGAGTTAGCTTGGAAGCCTTTAAAAGAAGCACATGATGATCACACTCTCCCTCAATGTTGGCATGGTAGAAGACCTTTCAGAAGCATACATAAAGTTAGAAAATACTTCAAGCCTATGGCACTTTCTTTTGCTGGCGGCGGCCGAAGTAAAGCTCAGTTTGAAATCCCTCCTGAGGCACACCTCATAATATCAAACATGGGAAATGTTTGCTTGGGAATCTTAAATGGATCTGAAGATCTAAACCTAATTGGAGGATCAGCCACGTTAGTTATGACAGTTAAGTTGGTTACAAGATATAGCAAGAAATACAAGCCATTTGTGAGTAGGTGTGTGGCGAAGGGGAACCTTGAGATTGGGAGTTTAAGAGAAGTTGATGTTAAGTCACGGCTACCTGCCACTACCAGCACTGAGAGATTGGAGATTCTTGATGACAATCAGCATATTCTTAGTGTAAGGATCATTGGTGGTGATCACAGACTCAGGGATCTTGAAGTGGATGATAAAATGGAAGAAAGAGTATTCTTTGATGAGATGATAGAAGAGTCAGATGATACAGAGGAGGAATTTCAAGGAATGTATCAAGATGAAATTGAGCAGGAAGCTGTGAATTCTGAGGATTTAGGGGAGCAAGAATTTCAAGCAATGTTTGATGGGAACGATTTTTCACATGGGGTGGATGAATTATATCGAATAGAAGATATTGAAAATATTGCCATGGTTGATTTTCTGAACATAGGTGCTCATGAGATGGAATGTTTTCATTTTCCTAATCTTCAGATTGCATTTGATTTCTATAACCATTATGCGAAATCTGTTGGTTTTGGTGCTAGAAAAAGTAAGACTTGGAAAAATAGCAAAGGAGAATATGTGAAGCAATTGTTTGTGTGCTCTTGTGAGGGATTTAGACCAGAGAAATATTATAATATGGAAAACAGAAAAAGGGAGCCAAAATCTGAGACTCGTTGTGGTTGCCTGGCTAGGTTTGTAGTTCATTTTGTGGCTTACACTGGAAGATGGCATGTGGCTTTGTTTGTTGAATCGCACAATCATGATTGCCTTGATCCTAGGTTACTATTTTGGTGTGATGGAAGAAGCAAATTAGATTATGAAGTATTTGGAGATGTGCTTGCCTTTGATGCGACATACAAAAAGAACAAGTACTTATGTCTAGTAGTAGTATTTTCCGGTGTGAATCATCACAACCAAACAGTGGTATTTGGAAGTGCTCTAGTTACCGATGAGAGTAAGGAGGTCTACGTGTGGTTATTACAGCAATTATTGGCAACCATGAAGGGAAAATCACCTGTATCTATGATTAAAGATGGTGCTCCATCAATGAGGTTTGCAATTGAGACGGTATTCCCAAATGCCTATCATAGATTATGTGCTTGGCACCTCATTCGGAACGCCACAAGTAATGTTAGAAACCCAAAATTTACATCTATGTTTAAGAAGTGCATGCTAGGAGATTATGAGATTAGTGTGTTTGAGCAGAAGTGGTTTGGAATGGTTGAGGAGTTTGGTGTAGCTGAAAAGAATTGGATTATTGACATGTACGAGAAAAGGCATATATGGGCCACTACACATATTTGA 2055 0.4024 MDEAVVENFFSLKSTNWRPEFRVSHDYGERQIAELLLLLLLLLCRARRRAILFIFVVATSLPGAVAVSLSPEHVAVAASFEYANHYSSLGVLVNDVYLLNFTNGIQLRVRMTLGCGYDHLFQEHSYHPLDGMLGLGRGRSSLVSQLNSQGLLNKELAWKPLKEAHDDHTLPQCWHGRRPFRSIHKVRKYFKPMALSFAGGGRSKAQFEIPPEAHLIISNMGNVCLGILNGSEDLNLIGGSATLVMTVKLVTRYSKKYKPFVSRCVAKGNLEIGSLREVDVKSRLPATTSTERLEILDDNQHILSVRIIGGDHRLRDLEVDDKMEERVFFDEMIEESDDTEEEFQGMYQDEIEQEAVNSEDLGEQEFQAMFDGNDFSHGVDELYRIEDIENIAMVDFLNIGAHEMECFHFPNLQIAFDFYNHYAKSVGFGARKSKTWKNSKGEYVKQLFVCSCEGFRPEKYYNMENRKREPKSETRCGCLARFVVHFVAYTGRWHVALFVESHNHDCLDPRLLFWCDGRSKLDYEVFGDVLAFDATYKKNKYLCLVVVFSGVNHHNQTVVFGSALVTDESKEVYVWLLQQLLATMKGKSPVSMIKDGAPSMRFAIETVFPNAYHRLCAWHLIRNATSNVRNPKFTSMFKKCMLGDYEISVFEQKWFGMVEEFGVAEKNWIIDMYEKRHIWATTHI 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02509 684 PANTHER OS02G0262500 PROTEIN 511 682 - -
Aip10g02509 684 SUPERFAMILY Bet v1-like 255 315 - -
Aip10g02509 684 PANTHER OS02G0262500 PROTEIN 411 505 - -
Aip10g02509 684 Pfam Xylanase inhibitor N-terminal 78 155 IPR032861 -
Aip10g02509 684 Gene3D - 244 326 IPR023393 -
Aip10g02509 684 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 411 505 IPR031052 GO:0006355
Aip10g02509 684 Gene3D Acid Proteases 68 158 IPR021109 -
Aip10g02509 684 SUPERFAMILY Acid proteases 78 239 IPR021109 -
Aip10g02509 684 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 511 682 IPR031052 GO:0006355
Aip10g02509 684 Pfam MULE transposase domain 529 623 IPR018289 -
Aip10g02509 684 Pfam FAR1 DNA-binding domain 417 507 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02509 Aip-Chr10 111534929 111539692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02509 151 238 Miscellaneous Gene Families AT1G77480 46.739 8.06e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip10g02509 MULE 8.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02509 - - aip:107620900 753.821