Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02501 ATGGTGTGTGAGAAGGAGAGGGAGTGCATTGAGGACATGGAAATTGAAATCCTGCCTTCAATGTGGCCTGAAGATATTGGAAGTGAAGTTGGAAAGCAGTTCAATATCGAAAAGCCTGGAAGGGAGCAGGATATGTTAGAGGATGTTACAATCATAGAGGAGCCAACTATAGCCGATTTCAAGCGCCTCATGGAGCTTACAAATTTCACTGAAAAAGGGTCTTCTCAGTTGGCATACCTCATGAAACATTGGGAGTACAAGCAGGCAAATGCGGTGCGCCTTCTGAGGGAAGAGCTCGACAACCTTAGCAAACAAAGGCAGGATGTTGAGCTAAGGAAGCTGGAGATATTGGAGGAGCACCGGTTCGAGGAAGAAAGATATGGAGGCGACAAAAGGCCGGTGTCTATATTGGAGGATGTTTATGACATATGGCAGGACATGCCGCGAAGGAAGAACAAGGTTGTGCTTCAGAACAAGAGAATTGAAATAGATGCTGCTGAGTATGATACTGTTAAGTATTGGAAACAAAGGGCCTTGCGTTTGGAGAAATTGCTTGAGGCAAGCATCCAGAGAGAGCAGATACTCCAAGACAAGTTGCTTGAAAGGATCAACAACATTGAGAGGCAATCCTCACCTGTAGAAGAACTCTCCCAGATTCTCAAAAGAGCAGATAATTTCTTGCATTTCATCCTCCAGAATGCACCTGTTGTTATTGGCCATCAGGACAAGGAATTGCGATACCGGTTCATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGACATAATAGGAAAAACAGATGTTGAAATATTCACAGGATCTGGGGTCAAAGAATCTCAAGAGTTCAAGAGAGAAGTCTTGGAGAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTCGGATCAAAGACATTCTTGATATATGTAGAACCCGTGTTTAGCAAAGTAGGGGAGACAATTGGAATAAACTATATGGGAATGGATGTAACAGATCAGGTGCGGAAAAGAGAAAGGATGGCTAAGATTCGGGAAGAGATTGCAGTTCAGAAAGCAAAGGAAACAGAACTAAACAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCCACAATGTCTCATGAGATAAGGTCTCCATTATCTGGGGTAGTTAGCATGGCTGAAGTTCTTTCTACCACAAAGCTTGATGGGGAGCAAAGACAGCTCTTGGATGTTATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAATCAGGAGTTATGAAGCTCGAGGCAACTAAATTCAGGCCACGAGAGGTAGTAAAGCACGTACTCCAGACGGCTGCAGCGTCGTTGCAGAAAATATTAACCTTAGAAGGACATGTGTCAGATGATGTACCAATTGAGGTTATTGGTGATGTTTTAAGGATCCGGCAAATTCTTACAAATTTGATCAGCAATGCGATCAAGTTTACACATGAAGGGAAAGTAGGTATAAACCTATATGTTGTTTCAAATATTTCAGCAACTCAAGCAAATGAAGATAGATACCTCTCAACACCTCAAAGTAGCAGTGACCGAAATCTTCTTGATGATCAGAGACATGATCACCCTCAAGGCCAAAACCATGCATTTCATGGTGAATGCGGATCATCAATTAAAAATGAATGCTCAGTAAATGAAGACACTGAGGAGCATCATCATTTAACAGAGACAACGGTGTGGATACGCTGTGATGTGTATGACACAGGCATTGGAATACCAGAAAATGCAATACCTACTTTATTTAAAAGGTACATGCAAGTTGGCACAGATCATGCTCGAAAGTATGGTGGCACAGGACTAGGATTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCATCTAACAGTGTCTAGCAAAGAACACCATGGTTCTACCTTCACATTCATACTTCCCTGCAAGGTTTCAATAATTGAAGAAAATTCTGATGACACAGATGAACTATCTGATATGGAGAATGACGAAGGTGCTTGTGATTATACAACAGAAAGTTTCTTCCAATTCCAACCGCGAACTTTAGGCTCTCTTTTCTCTTCCAATGGTTCTAGCAGAGCACACAAGTTATTAACACATAAGATTGGCTACACAAGCTCACATACTTCAGAGTGTTCATTCTCATTTCCATTCCCATTTCATGATATCATATCAAAAGGGACATGTTCTGTTCAGGATTCATCTTTAGTAGTTGATGCTCCAGAGATATCAGAATCATCAGCAAGTTCATCCGGTCAGAGCCGAGAAACAAACATCGAAAATATAGTTAGCAGTGATAAATATTGTCAAGATAAGGGTATTACAGATTCTTCTAAACATATGGTGGAAGGTTCTGAAATGGATATAGCAACAAAGCCAAGTGAACTTCAGAAAACATGTAAGGTTCAAGGGAATGCAAACGTGACAACTCAATGTGTTACTAGCATCTGTGCATCAGAATTAACCAGATCCACATCAAAGCCTAAGATCCTTCTGGTTGAAGATAGCAAGATTAATGTCATGGTGACACAATCCATGATGAAGCAGTTAGGCCATAGCATAGATGTTGTGAATAATGGAGCCGAAGCAGTGCGTGCCGTTCAGCGCTGCTCTTATGACTTGGTTTTGATGGATGTTTGCATGCCAATAATGAATGGCCTTCAGGCAACGAAATTGATCCGGTCTTTCGAGGAAACAGGAAACTGGGATGCTGCAAGAAAAGTTTTAATGGAGTTAAATCTACCAGATCTAGATCATGAATGTTCTGGACCATCTAAAAAGCGGATCCCAATTGTCGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAATGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTATGTATAAAAGAATGA 2946 0.4104 MVCEKERECIEDMEIEILPSMWPEDIGSEVGKQFNIEKPGREQDMLEDVTIIEEPTIADFKRLMELTNFTEKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILEDVYDIWQDMPRRKNKVVLQNKRIEIDAAEYDTVKYWKQRALRLEKLLEASIQREQILQDKLLERINNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKVGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSTTKLDGEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVSDDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKVGINLYVVSNISATQANEDRYLSTPQSSSDRNLLDDQRHDHPQGQNHAFHGECGSSIKNECSVNEDTEEHHHLTETTVWIRCDVYDTGIGIPENAIPTLFKRYMQVGTDHARKYGGTGLGLAICKQLVELMGGHLTVSSKEHHGSTFTFILPCKVSIIEENSDDTDELSDMENDEGACDYTTESFFQFQPRTLGSLFSSNGSSRAHKLLTHKIGYTSSHTSECSFSFPFPFHDIISKGTCSVQDSSLVVDAPEISESSASSSGQSRETNIENIVSSDKYCQDKGITDSSKHMVEGSEMDIATKPSELQKTCKVQGNANVTTQCVTSICASELTRSTSKPKILLVEDSKINVMVTQSMMKQLGHSIDVVNNGAEAVRAVQRCSYDLVLMDVCMPIMNGLQATKLIRSFEETGNWDAARKVLMELNLPDLDHECSGPSKKRIPIVAMTANALSESAEECFANGMDSFVSKPVCIKE 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02501 981 ProSiteProfiles Response regulatory domain profile. 847 981 IPR001789 GO:0000160
Aip10g02501 981 Coils Coil 92 119 - -
Aip10g02501 981 Gene3D PAS domain 207 336 - -
Aip10g02501 981 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Aip10g02501 981 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 6 979 - -
Aip10g02501 981 CDD HATPase_EvgS-ArcB-TorS-like 488 660 - -
Aip10g02501 981 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 659 IPR003594 -
Aip10g02501 981 CDD HisKA 374 433 IPR003661 GO:0000155|GO:0007165
Aip10g02501 981 SMART HKATPase_4 483 662 IPR003594 -
Aip10g02501 981 Pfam Response regulator receiver domain 848 915 IPR001789 GO:0000160
Aip10g02501 981 MobiDBLite consensus disorder prediction 539 553 - -
Aip10g02501 981 SMART REC_2 846 980 IPR001789 GO:0000160
Aip10g02501 981 SUPERFAMILY CheY-like 844 978 IPR011006 -
Aip10g02501 981 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Aip10g02501 981 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Aip10g02501 981 MobiDBLite consensus disorder prediction 526 555 - -
Aip10g02501 981 Gene3D - 840 981 - -
Aip10g02501 981 Gene3D - 436 665 IPR036890 -
Aip10g02501 981 PRINTS Bacterial sensor protein C-terminal signature 587 601 IPR004358 GO:0016310|GO:0016772
Aip10g02501 981 PRINTS Bacterial sensor protein C-terminal signature 622 640 IPR004358 GO:0016310|GO:0016772
Aip10g02501 981 PRINTS Bacterial sensor protein C-terminal signature 646 659 IPR004358 GO:0016310|GO:0016772
Aip10g02501 981 ProSiteProfiles Histidine kinase domain profile. 379 662 IPR005467 -
Aip10g02501 981 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 660 IPR036890 -
Aip10g02501 981 Gene3D - 337 435 - -
Aip10g02501 981 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 979 - -
Aip10g02501 981 Coils Coil 189 209 - -
Aip10g02501 981 CDD REC_hyHK_CKI1_RcsC-like 848 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02501 Aip-Chr10 111265581 111270948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02501 1 981 Histidine Kinase Gene Family AT5G10720 56.313 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip10g02501 HATPase_c 4.5e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02501 - - gmx:100819520 1487.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02501 10 111265581 111270948 Aip10g02501 10 111265581 111270948 ECH