Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02490 ATGTCGTTCAAAAGCATAGTACGCGAACTCAAGGAGATGAGAGATGGGATTGGTAGCTTATCGAGGCGGAGCGCAGAAAGCAAGCATTGGCACAGTAGAGTAAAGTCACATGTTGTTCCTGATGTCACTCTAAATCCACTTGAACCTGTTCAACAGGGGCAGTGGGCACATCTACCACCTGAGTTACTTCTGGACATAATTCATAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGCACCGTTGTTGTGTCGTGTGCTTCAGTATGTAAATCATGGAGGGCTGTTACAAAAGAGATTGTCAATACTCCTGAGCAGTGCGGAAGGCTCACGTTTCCTATTTCATTGAAACAGCCCGGTCCTCGTGAGTCACCAATTCAGTGCTTTATCAGGAGAAACAGAGAAACTTCAACATATTTATTGTACTTCGGTCTTGTGCCATCGGAGAATGGGACTGATAAGTTGTTATTAGCTGCTAAAAAGATAAGAAGGGCAACAGGCATAGACTTTGTCATATCTTTGGTTGCAAATGATTTTTCTCGGTCCAGCAACACATATGTTGGTAAACTAAGGTCTAATTTTTTGGGAACCAAGTTCACTATCTGCGACAACCAATCTCCCCATCAAGCTGGAACTCAGCCAAATGGTCGTTCTAGTAAGAGATTCCACACTAAGCAGGCGTCTCCGAGGGTTTCAGCTATTTAA 705 0.4426 MSFKSIVRELKEMRDGIGSLSRRSAESKHWHSRVKSHVVPDVTLNPLEPVQQGQWAHLPPELLLDIIHRVEESETSWPARTVVVSCASVCKSWRAVTKEIVNTPEQCGRLTFPISLKQPGPRESPIQCFIRRNRETSTYLLYFGLVPSENGTDKLLLAAKKIRRATGIDFVISLVANDFSRSSNTYVGKLRSNFLGTKFTICDNQSPHQAGTQPNGRSSKRFHTKQASPRVSAI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02490 234 Pfam F-box domain 55 102 IPR001810 GO:0005515
Aip10g02490 234 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 233 - -
Aip10g02490 234 Pfam Tub family 116 230 IPR000007 -
Aip10g02490 234 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Aip10g02490 234 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Aip10g02490 234 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Aip10g02490 234 SUPERFAMILY Tubby C-terminal domain-like 104 212 IPR025659 -
Aip10g02490 234 MobiDBLite consensus disorder prediction 205 234 - -
Aip10g02490 234 Gene3D Tubby Protein; Chain A 113 234 IPR025659 -
Aip10g02490 234 Gene3D - 48 103 - -
Aip10g02490 234 PANTHER TUBBY-RELATED 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02490 Aip-Chr10 110973859 110975079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02490 1 231 TUB Transcription Factor Family AT2G18280 65.948 2.80e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aip10g02490 Tub 4.2e-34 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02490 K19600 - aip:107620906 474.167