Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02474 ATGGGTCGTGGAAGAATACCAATGGAGCTGATTGAGAAGGAAAAAGCTCGGAAGGCAACATTCCTAAAGAGAAAGAATGGATTAATAAAGAAAGTGTACGAATTCTCGACACTTTGTGGTGTTGATGTTTGTGTAATCATCTATGGCCCCAGCTTTGATGGCGGAAAATCCACCGAAGCTGAAACATGGCCCCAAGATCCTAAGGAGGTACAGCGAATCATTCAAAAGTACCATAACACAACGATTGATAGACGTCCTAGGATCTATGATGTTCAAGAGTATTATAGAGATAGGGTTAAGAAGATTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGCTTAAGATCATGTATCCTACTTGGGATGACTCATTCAATGATCTTAGGGAGGACCAATTGAGAATGTTTCTTAGCATTTTGGATTCTAAGATTCTTGCTTGCAATCAAAGAATCAACATGCTAAAGCAAGATCCTAAGGGAAAAACAATGGTACAATCAAAACCCAGTTTTGAGGATGTTAGCCACTTTAATTTCATGCCAAACATGTCTCAAGCACAGTTTCTTCCTCATCTTCCCATGACACCCATTATTGATGATACCCCCCAATTACCATTCTACCCTTTGCAAGTAGGGCAAAGTTCATCACAATCTTCCCCTCTTCTTTTTGACCAAAATAGTGGGACTGTGGATTGGGAGCAACAAGTTGGTGCTTGTAGCACTCATGACAAAGGGAATATACAATCAATGCAGCCATATAGTTTTGCTCTATCACAATATCAAGATATGCCTCACGAGTTTCAAGTTATTAATGGACTCTATGATGCAAATATGCTTCATCATCAAGTTCAAATGTTCAACTACATGCATGAAAGGAAGTAG 879 0.3948 MGRGRIPMELIEKEKARKATFLKRKNGLIKKVYEFSTLCGVDVCVIIYGPSFDGGKSTEAETWPQDPKEVQRIIQKYHNTTIDRRPRIYDVQEYYRDRVKKIEGEISKVHKEKLKIMYPTWDDSFNDLREDQLRMFLSILDSKILACNQRINMLKQDPKGKTMVQSKPSFEDVSHFNFMPNMSQAQFLPHLPMTPIIDDTPQLPFYPLQVGQSSSQSSPLLFDQNSGTVDWEQQVGACSTHDKGNIQSMQPYSFALSQYQDMPHEFQVINGLYDANMLHHQVQMFNYMHERK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02474 292 SMART madsneu2 1 63 IPR002100 GO:0003677|GO:0046983
Aip10g02474 292 PANTHER PROTEIN, PUTATIVE-RELATED 3 277 - -
Aip10g02474 292 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Aip10g02474 292 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Aip10g02474 292 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Aip10g02474 292 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Aip10g02474 292 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aip10g02474 292 PANTHER MADS BOX PROTEIN 3 277 - -
Aip10g02474 292 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip10g02474 292 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip10g02474 292 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02474 Aip-Chr10 110738286 110739164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02474 1 278 Type I MADS-box Gene Family AT5G55690 29.932 6.11e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip10g02474 SRF-TF 6.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02474 - - adu:107470541 541.962