Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02426 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGAGCGCAAGCCAATTTATAATTTGGATGATTCTGATGATGATGCCGATTTTTTGCCAAGAAAACCTGGGACTACTCAGGAAACATTTGAGAGGATAGATAGAAGTGATACGAAAGAAAATTTGTGTCAAGCCTGTGGAGAAAGTGACAATCTTCTGAACTGTGATACATGCACTTATTCTTACCATCCCAAGTGTTTAGTTCCACCAATTAAAGGTCCCATTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCACTCAATGATATTGATAAAATATTAGATTGTGAGATGCGCCCTACTGTAGCTGCTGATGATGATGCCACAAATTTAGGATCAAAGCAAATATTTGTGAAACAATACCTTGTTAAGTGGAAGGGACTCTCGTACTTGCACTGCACATGGGTTCCAGAGAAAGAGTTTGTGAAAGCTTTCAAGGCTTATCCTCGTTTAAGGACCAAAGTGAATAATTTCCATCGTCAAATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAGTGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGTTGATGATGAGAAGGAATATCTTGTGAAATGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGACAGATATTTCAGCATTTCAACCAGAAATAGAAAGATTCAATAAATTCCGGTCTAGATCCAGCAAACTTGCCTCCATGAAGCAAAGAAGCAGTATTAAGGATGATGTTGAATTGAAGAAACAGCAGAAGGAATTTCAACAGTTTGAACATAGCCCTGAGTTTCTTTCAGGCGGTACGCTACATCCGTATCAGCTAGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTGGCTGATGAAATGGGGCTTGGCAAAACCATACAAAGTATTGCATTCTTAGCATCTCTTTTTGAAGAGGGTGTTTATCCACATCTGGTGGTTGCTCCACTTTCGACATTGCGGAACTGGGAACGTGAATTTGCAACATGGGCACCTCACATGAATGTCGTTATGTATGTTGGATCTGCCCAAGCCCGTTCTGTCATAAGAGAGTATGAATTTTACTTCCCAAAGAAACAGAAGATCAAGAAAAAGAAATCTAGTCATATAAGTAGCGAAAGCAAGCAAGATAGGATTAAGTTTGATGTCCTTTTGACTTCATATGAGATGATCAACTATGACACAGTATCACTGAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGACACCGTCTGAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGAGTGCTCTTAACTGGGACTCCTCTTCAGAACAACCTTGACGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAAATTTCAAGACTTCATAAAATGTTGGCCCCTCATCTGCTACGAAGAGTAAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAGCTTATTTTACGTGTGGATTTGAGCAGCAAACAGAAAGAATACTATAAGGCAATTTTAACCCGTAATTATCAGATTTTAACTCGTCGTGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTTCGTAAACTCTGTTGTCACCCGTACATGCTAGAGGGAGTTGAACCAGAAATTGATGATCCAAAAGAGGCATTCAGACAACTTCTGGAAACATCGGGGAAGTTGCAATTGGTGGACAAGATGATGGTGAAGCTTAAAGAACAAGGACATAGAGTCCTCATATATTCCCAATTTCAACACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAACGGATAGATGGCAAAGTTGGTGGAGCTGAAAGACAAATAAGGATAGATCGTTTTAATGCAAAAAATTCTTCAAGATTTTGCTTTCTTCTCTCTACTAGAGCTGGTGGATTGGGGATAAACCTTGCAACTGCTGACACGGTTATTATATATGACAGTGATTGGAATCCTCATGCTGACTTACAAGCTATGGCTAGAGCTCATCGTCTTGGACAAACTAACAAGGTGCTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAAAGGATGATGCAGATGACAAAGAAGAAAATGGTGTTGGAGCACCTGGTTGTAGGGAGGTTAAAGGCTCAAAACATCAACCAGGAAGAGTTGGATGACATCATAAGGTATGGGTCAAAGGAGTTATTTGCTGATGAAAATGATGAAGCAGGAAAATCTCGCCAGATCCATTATGATGCTGCTGCTATTGATAGATTGCTGAATCGTGATCAAGCTGGAGATGAAGAGGCTACCGTGGATGATGAAGACGATGATGGGTTTTTGAAGAATTTTAAGGTGGCAAATTTTGAGTATATTGATGAAATTGAGGCTGCAGCAGAGGAGGCCGCACAAAAACGTGCAATGGAGACTATGAACAATTCAGAAAGAGCACATTACTGGGAGGAGTTGTTAAAAGATAAATATCAAGAGCATAAAGTTGAGGAGTTTAGTGCATTGGGCAAAGGGAAGCGAAACCGTAAGCTGATGGTATCTGTAGAGGAGGATGACCTTGCCGGCCTGGAAGATGTAAGTTCTGATGGTGAAGATGACAACTATGAAGCAGAGCTTACCGATGGTGAATCGAATTCAGCCGGTGCTACTACTGTTAGAAGGCCTTATAAAAAGAAACTTCGAGCTGATAGCGGTGAGCCACTTCCTCTGATGGAAGGTGAAGGGAAATCGTTCAGAGTACTTGGTTTCAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGAATTCGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTACCAAGAAATCAAAGATTATGGAACTCTTTTCTTGTCTCATATTGCTGAAGATATTACTGATTCATCTACATTCACTGATGGTGTTCCCAAAGAGGGACTGCGAATACAAGATGTACTTGTAAGGATTGCACTTTTGCTCCTGATAAGGGACAAAGTAAAGTCTGCATCACGAAACCCTGGAACGCCACTGTTTACGGATGACATCTTACTACGCTATCCAGGACTGAAGGGTGGAAAGATATGGAAGGAGGAGCATGATTTAGTTTTATTACGTGCTGTATTGAAGCATGGGTACGGGAAATGGCAGTCGATTGTTGACGATAAGGATATCAGAATTCAGGAGCTTATCTGTCAGGAGTTGAATCTTCCTATCATAAATTTACCAGTAGCAGGGCAACTTGGTTCGCAGGTGCAAAATGGCACAAATTTGTTAAATACAGAAGTTCCCAGCAACCAATCCAGGGAAAATGGTGGGACGGATGTTACAGCTGATGCTGCACAAGGTTCCGGTGAAGCTAAGAACCAAACACAGTTATATCAAGACTCCAACATATTTTATCATTTTAGAGACATGCAGAGGAGACAGGTTGAGTTCATAAAAAAGAGGGTCCTTCTCTTGGAAAAGGGTCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAAGTGAAGTGGCAACTGAAGAACCTAAAAGTGAACCCAAGGCGACAAACTTTCCAAGCTATAAATTAGGGGACACCGACACCCAGATGACTGATCAACTGCCTCGACTAAAAGCAATAACTGCAGAGGAAACTTCACTTGCTTGTGATAATGATCCAAATCGATCAGAATTGGTTCACCTTTACAATAAGATGTGCAAGGTAGTGGAGGAAAACCCCATTGACAGAGTTAGAGCATCCTTGGCTCGAGAATCAGCTGATGTGAGTGTTACGAAGAATTTTCCGCCACTGGAAACCATTTGTGAAGATACGCACAGAATTTTAACACCCACACAACCAGATCAAACCGCCACTGACAAGTCAAAATTGCATTCAGATGACTGCAAAGTGGATAACACTGTTGACAATGAGAGTAGAGATATGGAAATAGAATTAGATTCTGCAAAAGAAGGCCGCACAAACCTGGGAAAGGAGAATGGTCAGTCCCCAATTCTTCCGGGGAAGCAGGATGATATAGAAATGGATGAAAGTAAGATTGACGGGTTGAATGATAACACACAAAAATCTGATGCTGGGGTTGTTGTATTGGAAGATTAG 4263 0.4089 MSSLVERLRVRSERKPIYNLDDSDDDADFLPRKPGTTQETFERIDRSDTKENLCQACGESDNLLNCDTCTYSYHPKCLVPPIKGPIPDNWRCPECVSPLNDIDKILDCEMRPTVAADDDATNLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKAYPRLRTKVNNFHRQMASVNTSDEDFVAIRPEWTTVDRILACRGVDDEKEYLVKWKELPYDECYWEFETDISAFQPEIERFNKFRSRSSKLASMKQRSSIKDDVELKKQQKEFQQFEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVYPHLVVAPLSTLRNWEREFATWAPHMNVVMYVGSAQARSVIREYEFYFPKKQKIKKKKSSHISSESKQDRIKFDVLLTSYEMINYDTVSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPEIDDPKEAFRQLLETSGKLQLVDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLNRDQAGDEEATVDDEDDDGFLKNFKVANFEYIDEIEAAAEEAAQKRAMETMNNSERAHYWEELLKDKYQEHKVEEFSALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGESNSAGATTVRRPYKKKLRADSGEPLPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGVGEFDWKEFTSRMKQKTYQEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIALLLLIRDKVKSASRNPGTPLFTDDILLRYPGLKGGKIWKEEHDLVLLRAVLKHGYGKWQSIVDDKDIRIQELICQELNLPIINLPVAGQLGSQVQNGTNLLNTEVPSNQSRENGGTDVTADAAQGSGEAKNQTQLYQDSNIFYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKASEVATEEPKSEPKATNFPSYKLGDTDTQMTDQLPRLKAITAEETSLACDNDPNRSELVHLYNKMCKVVEENPIDRVRASLARESADVSVTKNFPPLETICEDTHRILTPTQPDQTATDKSKLHSDDCKVDNTVDNESRDMEIELDSAKEGRTNLGKENGQSPILPGKQDDIEMDESKIDGLNDNTQKSDAGVVVLED 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02426 1420 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Aip10g02426 1420 Gene3D - 180 241 - -
Aip10g02426 1420 SMART ultradead3 282 494 IPR014001 -
Aip10g02426 1420 Gene3D - 1035 1213 - -
Aip10g02426 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 518 IPR027417 -
Aip10g02426 1420 SMART PHD_3 53 96 IPR001965 -
Aip10g02426 1420 SMART helicmild6 637 721 IPR001650 -
Aip10g02426 1420 MobiDBLite consensus disorder prediction 903 921 - -
Aip10g02426 1420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 102 IPR013083 -
Aip10g02426 1420 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1053 - -
Aip10g02426 1420 MobiDBLite consensus disorder prediction 903 936 - -
Aip10g02426 1420 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1053 - -
Aip10g02426 1420 Pfam Helicase conserved C-terminal domain 609 721 IPR001650 -
Aip10g02426 1420 MobiDBLite consensus disorder prediction 1341 1355 - -
Aip10g02426 1420 MobiDBLite consensus disorder prediction 1369 1420 - -
Aip10g02426 1420 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Aip10g02426 1420 Pfam CHD subfamily II, SANT-like domain 932 1065 IPR009462 GO:0003677|GO:0006338
Aip10g02426 1420 Pfam SNF2-related domain 306 585 IPR000330 GO:0005524|GO:0140658
Aip10g02426 1420 Pfam CHD subfamily II, DUF1087 843 901 IPR009463 -
Aip10g02426 1420 Gene3D - 278 527 IPR038718 -
Aip10g02426 1420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 483 IPR014001 -
Aip10g02426 1420 CDD SF2_C_SNF 606 732 - -
Aip10g02426 1420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 772 IPR001650 -
Aip10g02426 1420 MobiDBLite consensus disorder prediction 1391 1405 - -
Aip10g02426 1420 CDD CD1_tandem 98 172 - -
Aip10g02426 1420 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Aip10g02426 1420 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 157 IPR023780 -
Aip10g02426 1420 Gene3D - 528 752 IPR027417 -
Aip10g02426 1420 MobiDBLite consensus disorder prediction 1142 1173 - -
Aip10g02426 1420 ProSiteProfiles Chromo and chromo shadow domain profile. 192 241 IPR000953 -
Aip10g02426 1420 SUPERFAMILY Chromo domain-like 177 242 IPR016197 -
Aip10g02426 1420 SMART DUF1087_2 838 904 IPR009463 -
Aip10g02426 1420 CDD CD2_tandem 190 241 - -
Aip10g02426 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 776 IPR027417 -
Aip10g02426 1420 SMART DUF1086_2 909 1068 IPR009462 GO:0003677|GO:0006338
Aip10g02426 1420 SMART chromo_7 99 165 IPR000953 -
Aip10g02426 1420 SMART chromo_7 190 244 IPR000953 -
Aip10g02426 1420 MobiDBLite consensus disorder prediction 1222 1249 - -
Aip10g02426 1420 MobiDBLite consensus disorder prediction 1332 1355 - -
Aip10g02426 1420 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Aip10g02426 1420 SUPERFAMILY Chromo domain-like 66 176 IPR016197 -
Aip10g02426 1420 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Aip10g02426 1420 Gene3D - 103 175 - -
Aip10g02426 1420 Pfam PHD-finger 54 96 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02426 Aip-Chr10 109348409 109362229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02426 308 782 RAD5 or RAD16-like Gene Family AT1G02670 23.862 1.07e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip10g02426 SNF2_N 1.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02426 K11643 - gmx:100804203 2391.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02426 10 109348409 109362229 Aip10g02426 10 109348409 109362229 ECH