Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02425 ATGACCATGGAGAATGGTGTTGATGATAGCAGTGATCAGTTCCCCAAAGGAATGCGTGTTCTTGCAGTTGATGATGACCCCACTTGCCTAATGGTTTTAGAAACTCTTCTCAGAAGATGTCAATATCATGTTACCACAACTAGCCAAGCAATAAAGGCATTGAAGCTGTTGAGAGAGAACAAGTTTGACCTTGTAATAAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTGGGACTGGAAATGGACCTACCTGTCATAATGTTGTCCGCAAATGGTGATACAAAGCTTGTGATGAAGGGGATTTCTCATGGAGCTTGTGATTATCTACTAAAGCCTGTGAGAATTGAAGAGCTCAAGAACATTTGGCAGCATGTGATTAGGAGAAAGAAGTTTGATTCGAAGGAGAAGAACAAAACCAGGAACTCCGACAAGCCTAGTTCGGAGGNNNNNNNNNNACAAAATGGGAAGCTGAATAAGAAAAGGAAGGATCAGGATGATGAAGAAGATGAGGAGCAAGATAATGGCCATGACAATGAGGATCCTTCGGCCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTTCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCTAAGAAGATTCTTGATTTGATGAATGTTGAAAAACTGACGCGGGAGAATGTGGCGAGCCATCTCCAGAAATATAGGCTTTATCTGAAACGAATCAGCTGTGTAGCGAACCAACAGGCGAATATGGTGGCGGCCCTAGGGAGTGCAGATCCATCCTACTTGAGAATGGGTTCTCTGAGTGGGGTTGGACATTTGCAAGCATTGAGTGGCTCGGGACAGTTTCCTAACAATGCTTTCAGGTCCTTTCCGCCAAATGGGATGGTTACCAGATTGAACACTCCTGCTGGATTGAATGTGCATGGATTCCCTTCTTCAGGAGCATTTCACTTGGGTCAATCACAGAATCTAAACAGCTCAACTGTTGAACAGCTGAAGTATCGGTCATCCATTGTTCCTGTTAATCAGAATGGTGTTCATGGAATGCAGGTGCCTATGGGGCTTGATCCATTGCAACACAATAAGGGTGTTATTCCTGTTCAGAACTTGACCACTGGTATTGATGCTAAAACAAATTTTCCTGTCTCAAATAAACTCCCGGATCCACAATCAAGAGTAGCATCCGGCGCGCATCCCCCGCTTCTTGGTAGCTCAAGCAATGCCTTGATGTTGGAAGCACGGCCACAAGACACACAAGGGGTTTTAGAATACGAAAACTTATCTTCTTCCGTACCTTCCCAACATTCAGAACTCCCGTTCTCTTTGCTGGATCAAGGTAGATACAGTGATAATTGGTCTAGTGCTGTGCAATCATCTGGGATCCAGACTGGTTCTTACCCTTCAAGCGAAAGTTTTAGACAGACGGCAATACCTGCTACAGATAACATGGCTTCATTACCCTTGCAAGAAGGGAATCTGAGTGTTTCTTCATCCATCTCCTTGCTGCCTAACCAGTCCTACAATTCGTTGATAGATACACACTCCCAAGCTGTGATTTTAGCTAATAGAACTGGTCATGTAAGCAATAGTGATGCACCATTTCAAGGTTGGGATGATCGCAATGAAGATGCTAGCTACCATTCAAATGCTGTTTGTAACACAATAAACACTGTGGCCCCAGGTTCGAGTTCTGTTGGTCACACAACAATAAACTCAACCTTACACAGAAACTTGGAGTTTAATTATGGTGATAGCTTGCAAATGAAGCACGATGCGATGACAAAGTTAGCGAAAGAGACCTCATTGAAACCGCATCAGGGGAATATCATGAACCCGCAGAAGTCTCAGCAGGGTAACTTCTCTAATAATGTTGGTTCCCTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAGCAAGATGAGATGAAAATATTGGATGGAGGCTTCATTTGTGATAATTATTCTGGTGGCATATCAATGTGA 2013 0.4362 MTMENGVDDSSDQFPKGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAIKALKLLRENKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEKNKTRNSDKPSSEXXXXQNGKLNKKRKDQDDEEDEEQDNGHDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADPSYLRMGSLSGVGHLQALSGSGQFPNNAFRSFPPNGMVTRLNTPAGLNVHGFPSSGAFHLGQSQNLNSSTVEQLKYRSSIVPVNQNGVHGMQVPMGLDPLQHNKGVIPVQNLTTGIDAKTNFPVSNKLPDPQSRVASGAHPPLLGSSSNALMLEARPQDTQGVLEYENLSSSVPSQHSELPFSLLDQGRYSDNWSSAVQSSGIQTGSYPSSESFRQTAIPATDNMASLPLQEGNLSVSSSISLLPNQSYNSLIDTHSQAVILANRTGHVSNSDAPFQGWDDRNEDASYHSNAVCNTINTVAPGSSSVGHTTINSTLHRNLEFNYGDSLQMKHDAMTKLAKETSLKPHQGNIMNPQKSQQGNFSNNVGSLEDLVSSMMKQEQDEMKILDGGFICDNYSGGISM 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02425 670 Gene3D - 188 251 - -
Aip10g02425 670 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Aip10g02425 670 MobiDBLite consensus disorder prediction 391 415 - -
Aip10g02425 670 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Aip10g02425 670 MobiDBLite consensus disorder prediction 614 634 - -
Aip10g02425 670 MobiDBLite consensus disorder prediction 139 194 - -
Aip10g02425 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 645 - -
Aip10g02425 670 SMART REC_2 18 128 IPR001789 GO:0000160
Aip10g02425 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 645 IPR045279 GO:0009736
Aip10g02425 670 PIRSF RR_ARR_type-B 1 668 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aip10g02425 670 CDD REC_typeB_ARR-like 20 132 - -
Aip10g02425 670 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Aip10g02425 670 Coils Coil 670 670 - -
Aip10g02425 670 Pfam Myb-like DNA-binding domain 194 244 IPR001005 -
Aip10g02425 670 SUPERFAMILY Homeodomain-like 190 249 IPR009057 -
Aip10g02425 670 Gene3D - 18 168 - -
Aip10g02425 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 248 IPR017930 -
Aip10g02425 670 SUPERFAMILY CheY-like 16 138 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02425 Aip-Chr10 109299615 109303587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02425 1 657 Response Regulator Gene Family AT2G25180 43.068 3.63e-135 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aip10g02425 Response_reg 4.2e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02425 - K14491 gmx:100809002 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02425 10 109299615 109303587 Aip10g02425 10 109299615 109303587 ECH