Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02418 ATGGATACACAACAACAACCTCAACCTCATCATCGGTGTGATAAAATTGCAAGCAACAAACCATGGCAGAGTTCACAAGAAGGTCAAAAGGAGCATCAGCAAGAGCAAGTAGATACTACTTTGTTGGATCTGAATCTGAATGTCCATGATGATGATGAGTGCAGCACAGAGTTGAGCCTCATCACGTGTTTGGACATGGATAATTCCTCAAAAACTACTTCAATTGAAGAGAACAATAACAACAACAACAACAACAACACGTGTTGTGCAGGTTCTGATCAAAGAGTGTTCTCTTGCAACTACTGCCAGAGGAAATTCTACAGTTCACAAGCTCTTGGAGGACACCAAAATGCTCACAAGAGAGAGAGATCAATTGCAAAGAGAGGTCAGAATAGGTTATTAGGATCCTCACCATTTATGATCCCTTTTCTTCAACATCATCATAGATATGCTAGTATTGCATCTTTACCTCTCTACGGTGCTTGTGCAAACAAACCACTTGGAATTCAAGCTCACTCCTTGATTCACAAACCTTCTTTTGTTCATCATCATATATCAAATGGGTTTGGAAGACCACCTCCCCTCATTGGAAGTAGTAGTGTTGGTAGATTCCAGGTGGCCAAGAACATGCTCAATTCTGCAGCAGATAATGAAGAAATCACAGCTTATCTTGTTACTAGGACTACTCATCATTTGAAGACTAATCAAGAAGACAATATAATGATCAAGAATAATAAGCATCTTGATTTATCTCTTAAGCTCTAG 765 0.3935 MDTQQQPQPHHRCDKIASNKPWQSSQEGQKEHQQEQVDTTLLDLNLNVHDDDECSTELSLITCLDMDNSSKTTSIEENNNNNNNNNTCCAGSDQRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQNRLLGSSPFMIPFLQHHHRYASIASLPLYGACANKPLGIQAHSLIHKPSFVHHHISNGFGRPPPLIGSSSVGRFQVAKNMLNSAADNEEITAYLVTRTTHHLKTNQEDNIMIKNNKHLDLSLKL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02418 254 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 188 - -
Aip10g02418 254 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 198 254 - -
Aip10g02418 254 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 198 254 IPR044246 GO:0009788
Aip10g02418 254 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 188 IPR044246 GO:0009788
Aip10g02418 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Aip10g02418 254 MobiDBLite consensus disorder prediction 1 37 - -
Aip10g02418 254 SUPERFAMILY beta-beta-alpha zinc fingers 93 124 IPR036236 -
Aip10g02418 254 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Aip10g02418 254 Gene3D Classic Zinc Finger 69 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02418 Aip-Chr10 109120374 109121557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02418 92 254 C2H2 Transcription Factor Family AT1G80730 47.727 4.94e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip10g02418 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02418 - - aip:107621568 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02418 10 109120374 109121557 Aip10g02418 10 109120374 109121557 ECH
Aip06g03427 06 131207183 131208162 Aip10g02418 10 109120374 109121557 PCT