Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02412 ATGAATGATGTATTATGTTTCAGGAAAACAAGGATATGGCTTGGAACGTTTGAGACAGCAGAAGATGCAGCAAGAGCGTACGATGAAGCAGCAAGGTTGATGTGTGGAACGAGAGCCAGAACCAACTTCCCTTACAACCCTGATTCCTCTCACTCCACGCCATCCAAGCTTCTCTCTGCTACTTTAACCGCTAAGCTTCACAGGTGTTACATGGCCTCTCTTCAAATCACTAGACCTTCTCCCATCAACAATGGCGCCTTTTCCACTGCACCAACACCCACCATCCAACAGAAGAGACCACACAAGGATGAACAACAACAACAGCAACAGCAACAAGAACAACAATCTTCATCTTCATTGGAAGATGGCAACTGGGCTTCCATGAAGAAGGTTAAAGTGGAAAATCATGAGTTTATTAAGCCTCTTGAGGAAGATCACAATCACATTGAGCAAATGATTCAGGAGTTGCTTCATTATGGCTCCATTGAGCTCTCCACATCCAAAATGCTCCAGCTTCAGCGCCGCGCAACCTCTTCTTCGTACAGTCTTCGACGTTCGCCGCCGTCAACGGTAGTCAACGCCGCTAGACCGTCAGACAGCAACCGTCTCGATTTGCTCCGCTCAGTCGCCCATGAAGTCTACCTGGGCCCCACTGCTGTTCGACCTGTGAGTCCCCAGCCAGCGCCGATCCCTGCCTAG 699 0.4921 MNDVLCFRKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPDSSHSTPSKLLSATLTAKLHRCYMASLQITRPSPINNGAFSTAPTPTIQQKRPHKDEQQQQQQQQEQQSSSSLEDGNWASMKKVKVENHEFIKPLEEDHNHIEQMIQELLHYGSIELSTSKMLQLQRRATSSSYSLRRSPPSTVVNAARPSDSNRLDLLRSVAHEVYLGPTAVRPVSPQPAPIPA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02412 232 MobiDBLite consensus disorder prediction 80 96 - -
Aip10g02412 232 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 168 - -
Aip10g02412 232 CDD AP2 6 46 IPR001471 GO:0003700|GO:0006355
Aip10g02412 232 Gene3D AP2/ERF domain 4 45 IPR036955 GO:0003700|GO:0006355
Aip10g02412 232 MobiDBLite consensus disorder prediction 80 124 - -
Aip10g02412 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 8 168 - -
Aip10g02412 232 SMART rav1_2 6 50 IPR001471 GO:0003700|GO:0006355
Aip10g02412 232 Pfam AP2 domain 7 36 IPR001471 GO:0003700|GO:0006355
Aip10g02412 232 MobiDBLite consensus disorder prediction 107 124 - -
Aip10g02412 232 SUPERFAMILY DNA-binding domain 7 46 IPR016177 GO:0003677
Aip10g02412 232 ProSiteProfiles AP2/ERF domain profile. 1 44 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02412 Aip-Chr10 108896836 108899834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02412 9 166 AP2-EREBP Transcription Factor Family AT5G25190 54.321 5.65e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip10g02412 AP2 1e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02412 - - aip:107621703 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02412 10 108896836 108899834 Aip10g02412 10 108896836 108899834 ECH
Aip06g03424 06 131143668 131146167 Aip10g02412 10 108896836 108899834 PCT