Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02404 ATGGTTAGATGGTTACTCTACATTTATGGCCCAATGAATGCCAATGAAAAAGAAGAAAAGAAAAAGGGGGAGGTGGCGACTGTGGAGAGCGGCGGCGAAGGCGGAGGTGGGTTGGTGAACTGGCAGAATGCTCGGTACAAGGCGGAGATTCTGTCACACCCGCTTTACGAGCAGCTTCTGTCGGCACACGTGGCGTGCCTGCGGATCGCCACGCCGGTGGACCAGTTACCGAGGATCGACGCTCAGTTGGCTCAGTCCCAGAATGTGGTGGCCAAGTACTCTTCCTTCGCTCACGCTCCTCTCGGCGATGACAAAGAGCTCGACCAGTTCTTGTCACACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTTCGTGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGAGATTGAGCAATCCTTACAAAGTCTAACAGGAGTTTCGCCAGGGGAAGGTACCGGAGCAACAATGTCCGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTTCTGATAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTTATGGAACGTGTAAGACATGAATTGAAGCATGAACTGAAACAGGGTTATAAGGATAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAAAGACGAGCCGGAAAACTTCCCGGTGACACCACCTCTGTTCTTAAAGCATGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACAGGATTGCAATTGAAGCAGATCAATAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCACAGTAATCCTTCAACTTCTACTTCCTTGAAGAGCAAGCGCAAAAGGTGA 921 0.4843 MVRWLLYIYGPMNANEKEEKKKGEVATVESGGEGGGGLVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSSFAHAPLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGSDSMGFGPLVPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTSLKSKRKR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02404 306 Pfam KNOX2 domain 101 151 IPR005541 GO:0003677|GO:0005634
Aip10g02404 306 SUPERFAMILY Homeodomain-like 231 295 IPR009057 -
Aip10g02404 306 Pfam KNOX1 domain 46 87 IPR005540 GO:0003677|GO:0005634
Aip10g02404 306 CDD homeodomain 232 293 IPR001356 GO:0003677
Aip10g02404 306 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 16 306 - -
Aip10g02404 306 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 306 - -
Aip10g02404 306 ProSiteProfiles 'Homeobox' domain profile. 229 292 IPR001356 GO:0003677
Aip10g02404 306 SMART ELK_2 209 230 IPR005539 GO:0003677
Aip10g02404 306 MobiDBLite consensus disorder prediction 286 306 - -
Aip10g02404 306 ProSiteProfiles ELK domain profile. 209 229 IPR005539 GO:0003677
Aip10g02404 306 Pfam Homeobox KN domain 249 288 IPR008422 GO:0003677|GO:0006355
Aip10g02404 306 SMART KNOX2_2 97 152 IPR005541 GO:0003677|GO:0005634
Aip10g02404 306 SMART KNOX1_2 44 88 IPR005540 GO:0003677|GO:0005634
Aip10g02404 306 Pfam ELK domain 209 230 IPR005539 GO:0003677
Aip10g02404 306 SMART HOX_1 231 296 IPR001356 GO:0003677
Aip10g02404 306 Gene3D - 230 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02404 Aip-Chr10 108351210 108354646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02404 8 306 Homeobox Transcription Factor Family AT5G25220 82.450 0.0 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aip10g02404 KNOX2 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02404 - - gmx:100810257 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02404 10 108351210 108354646 Aip10g02404 10 108351210 108354646 ECH