Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02393 ATGATGATGATGACTACTACTTCTACTACTGCAGATTATGAAAGCGTGAAGCAGCTTCCTCCTGGGTTTTTGTTCTCTCCAACGGATGAAGAACTTGTCCTTCACTTTCTCTATGCCAAGGCTTCTCTTTTGCCATGCCATCCCAACATCATCCCTGATCTTGATCTCTCTCTCGCTCATCCTTCCCAACTCAACGATAAAGCGTTGTCAAGCGGAAATCAATACTATTTCTTCAGCAAAGTGAAGGAAAAAAGAATAACAGAAAATGGGTATTGGAAGGAAATAGGTGAAAGTGAAGCAATATTGTCATCAACGGTTGAGAAGAAAGTAGGGACAAAGAAGAACCTTGTATTCCACATAGGAGAAGCTCCACACGGCATTGAAACCAGTTGGGTCATGCAAGAATATCATATTTGCCGATCCTCTAACATTATTTCTACAAGTAGAGCCAGAAGAAAACACGATCATCAAATTTGGAGCAAATGGGTTTTGTGCAAAGTGTATGAAAAGAAGGGGTCCGTACGAGGTGTAAACTACTGTAGCGACGATGATGACAGTGGGACAGAGCTATCTTGGCTTGACGAAATTTATCTCTCGTTGGATGATGATCTCGAAGAAATTAGCGTCTCCATTTTAGATTGA 642 0.4128 MMMMTTTSTTADYESVKQLPPGFLFSPTDEELVLHFLYAKASLLPCHPNIIPDLDLSLAHPSQLNDKALSSGNQYYFFSKVKEKRITENGYWKEIGESEAILSSTVEKKVGTKKNLVFHIGEAPHGIETSWVMQEYHICRSSNIISTSRARRKHDHQIWSKWVLCKVYEKKGSVRGVNYCSDDDDSGTELSWLDEIYLSLDDDLEEISVSILD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02393 213 Pfam No apical meristem (NAM) protein 20 138 IPR003441 GO:0003677|GO:0006355
Aip10g02393 213 Gene3D NAC domain 28 174 IPR036093 GO:0003677|GO:0006355
Aip10g02393 213 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
Aip10g02393 213 SUPERFAMILY NAC domain 15 170 IPR036093 GO:0003677|GO:0006355
Aip10g02393 213 PANTHER NAC TRANSCRIPTION FACTOR 56 15 208 - -
Aip10g02393 213 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 15 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02393 Aip-Chr10 108032933 108033972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02393 19 178 NAC Transcription Factor Family AT1G69490 38.095 9.32e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip10g02393 NAM 9.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02393 - - adu:107470472 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02393 10 108032933 108033972 Aip10g02393 10 108032933 108033972 ECH