Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02375 ATGTATGTAAATTTTCTTTCTTCCATGAACGAAGCCCGAATTGAAATCACGATTCCACACTTGTTTAGATGCCCAATAAGCTTAGACTTGTTGGAAGATCCAGTGACACTATGCACAGGCCAAACCTATGACAGATCAAGCATTGAAAAATGGCTTTCTGCTGGTAACCTCACTTGCCCAGTCACAATGCAGAAGCTTCATGATCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCGACCAGTGGCTCCAACTTGGCTACCAATTCCACCCTGGAAACTCCGCAACAATCGATTACTTGACCAGCCTCAAACACGCTCTCGAGTCTCGTGACTCCTCCTTGGACCACAAGTTACAAGCACTCCACAAGATTCAGGTACTCTCCGACGAGTACTGCTCCTTCAAGCGCACATGCTTTAACCAACTGAGCTATTTGACGCTTCTATTACAACTTGTTTTCGAAACAAGGTCCATGGAATTCACAGAGCTGGCGCTTTCTTGCATCGTAAAGTTGCTTCCTCTCGTGAATTTGGATCCGCTGAACATGATCAAAGACGAGTCGAAGCTATCAACGTTTGTTTCGTTATTGGAAAAGGGAACAACCAAGACCAAAACAAGCTTGTGCCATCTCATAGATTCAACCGCAACATCAACACAAACGCAAGAGTTATGTCACGTTCTTGGAAATTCACGGAAGGTGATAGAAGAGATTGTGAGACTAGCTCGCGAAATCCAGGAGGAAGAGTCATCTAAAGCAGGAATCAAAGCCATGTCAGCATTATGCAGCTTGCAATCGAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATTGATGGAGTGATAGCATACATGTTGGAATCTGACAAGTTGCAGAAGAATTTGGCTCCAATGGCAATGGGGATAATAGAGAAGCTTGTGGTGTTAGAGAGTGGGAAAGTGGGAGTGGTGAACCACCCAAGTGGTATTCAAACGGTGGTGAAGATGGTGTTCAGGGTTTGCAACAACCAAGAGTATTGCTGTAGTGAGGTTGCCGTTGGGGTGCTTTTGGTAATTTGTCGTGATTATGGGGTTGCAAGAGAGGAAGCCATTGGAGCTGGGATCTTGACTCAGTTGCTTTTCCTTCTTCAGAGTCAGTGTGGTAACAAAACCAAGACCAAGGCCAGGATGCTTCTCAAGTTGTTGAGATCCAAGTGGAATCAGGAATCAAACAACAAACTATGA 1224 0.4518 MYVNFLSSMNEARIEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGYQFHPGNSATIDYLTSLKHALESRDSSLDHKLQALHKIQVLSDEYCSFKRTCFNQLSYLTLLLQLVFETRSMEFTELALSCIVKLLPLVNLDPLNMIKDESKLSTFVSLLEKGTTKTKTSLCHLIDSTATSTQTQELCHVLGNSRKVIEEIVRLAREIQEEESSKAGIKAMSALCSLQSNRESLVRGGAIDGVIAYMLESDKLQKNLAPMAMGIIEKLVVLESGKVGVVNHPSGIQTVVKMVFRVCNNQEYCCSEVAVGVLLVICRDYGVAREEAIGAGILTQLLFLLQSQCGNKTKTKARMLLKLLRSKWNQESNNKL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02375 407 PANTHER OS02G0542800 PROTEIN 17 398 - -
Aip10g02375 407 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842|GO:0016567
Aip10g02375 407 SUPERFAMILY ARM repeat 102 395 IPR016024 -
Aip10g02375 407 SUPERFAMILY RING/U-box 10 86 - -
Aip10g02375 407 CDD RING-Ubox_PUB 22 64 IPR045210 -
Aip10g02375 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 90 IPR013083 -
Aip10g02375 407 Pfam U-box domain 18 86 IPR003613 GO:0004842|GO:0016567
Aip10g02375 407 Gene3D - 189 407 IPR011989 -
Aip10g02375 407 PANTHER WDSAM1 PROTEIN 17 398 IPR045185 GO:0061630
Aip10g02375 407 SMART Ubox_2 21 84 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02375 Aip-Chr10 107552027 107553653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02375 16 399 U-box Gene Family AT3G19380 33.416 2.48e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02375 - - aip:107624179 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02375 10 107552027 107553653 Aip10g02375 10 107552027 107553653 ECH