Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02360 ATGCCCACTTGGTGGAGTAAAAAGTCCAGCAAGTCCAAGCAGCAGCAAGAACTGCAGCAGCCACATCAGCATGGAGGAGGAGGAGTTCGTCAATTCACCTTCACCAGATCAAACAACACCGTTTCTTCTTCTCTTTCACCTCCCAGTAAGGCCAAATCCGACAAGCCCAATCACAGCTTCGACGAAACCCTCTCCCGCAACTCACCAAGGGTCAGCAGAGACTTCTCTTCTACCCCCGCCGTAGCTTCCTCCGCCGCCGCCGCCGCCGCCGCCGGAGGCTCATCCTCCGGATTCTCATGCTTCGATTCCGACGGCGACAGGAAAGGCCACCCCTTGCCTCGCCCCTCTGTCTCCTCCACCCAAAGCTTCGGCAACGACCAAGGCCTTGTCTTCGGATCTGCCTCCGTCTCTGGTTCCAGCGTTAGTTCCACGGGCTCCTCTGATGATCAACCACCCACCCCTCGAAACACTCGTATGGATGCAACCAGAGGACAAAGTGACATAAAGTTCAATGCAAGGTCAAAAAGCCCGGGTCCTGAAAACACCACATGTAATCCATCCAAGTGGAAGAAAGGAAAGCTGCTAGGACGGGGTACATTTGGGCATGTATATGCTGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGTTTGTGATGATCAAACATCAAAAGAGTGCTACAAACAACTTAATCAGGAGATACTCTTGCTTAGTCAGCTTTCACATCCGAATATTGTTCAATACTATGGGAGTGACTTGGGAGAAGAAACACTTTCAGTTTATTTAGAATATGTTTCCGGTGGTTCGATTCATAAATTACTTCAGGAATATGGGGCCTTTAAGGAGCCTGTTATTCAAAATTATACTAGGCAGATTGTCTCTGGACTTGCCTATCTTCATGGTAGAAATACAGTGCACAGGGATATCAAGGGGGCTAACATACTAGTTGATCCAAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACATATAAATGCTTCTTCCTCAATGCTTTCTTTCAAAGGAAGTCCATACTGGATGGCCCCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCGAAGCCTCCTTGGAGTCAATATGAAGGGGTAGCAGCAATATTCAAAATTGGTAACAGCAAAGATATGCCTGAACTTCCTGAGCATCTATCGAATGAGGCAAAGAACTTCATCCAGTTATGCTTACAAAGAGATCCATTGGCTCGCCCAACAGCTCAAATGCTGCTAGATCACCCATTTATTCGAGATCAGTCGGCAACAAGAGCTGCAAATGTCAGCATAACCAGGAGTGCTTTCCCCTATATGCTTGATGGGAGCCGGACACCGCCACCTGAGATTTTTTCAAATAAAACGAATGCAACTTCATTTGATGGAGACTATGCAACAAGGGCAGCCCCTCCAGCCTCACGGGCTGTAAGGAACCAAAGAGATAACTCAAGAATGATCACATCATTACCCGTATCTCCTTGTTCAAGTCCATTACGGCAGTATGGACCAGCACACAAGAGCTGTTTCCTTTCACCTCCTCATCCAACTTGCACATTGATGGGACAAAATACCCTCCCGTCATATCCGTTGAGATCGAATGCCGCCTTCACTCTTGATCCTTGGCACGAAACATCTCCATACAGATCCCACCACACACCTGGTGGATCCCCAAGATCGAGACTCATTTGA 1770 0.4706 MPTWWSKKSSKSKQQQELQQPHQHGGGGVRQFTFTRSNNTVSSSLSPPSKAKSDKPNHSFDETLSRNSPRVSRDFSSTPAVASSAAAAAAAGGSSSGFSCFDSDGDRKGHPLPRPSVSSTQSFGNDQGLVFGSASVSGSSVSSTGSSDDQPPTPRNTRMDATRGQSDIKFNARSKSPGPENTTCNPSKWKKGKLLGRGTFGHVYAGFNSENGQMCAIKEVRVVCDDQTSKECYKQLNQEILLLSQLSHPNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINASSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPELPEHLSNEAKNFIQLCLQRDPLARPTAQMLLDHPFIRDQSATRAANVSITRSAFPYMLDGSRTPPPEIFSNKTNATSFDGDYATRAAPPASRAVRNQRDNSRMITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTCTLMGQNTLPSYPLRSNAAFTLDPWHETSPYRSHHTPGGSPRSRLI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02360 589 MobiDBLite consensus disorder prediction 30 53 - -
Aip10g02360 589 MobiDBLite consensus disorder prediction 62 83 - -
Aip10g02360 589 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
Aip10g02360 589 MobiDBLite consensus disorder prediction 1 22 - -
Aip10g02360 589 Pfam Protein kinase domain 190 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g02360 589 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 180 570 - -
Aip10g02360 589 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 180 - -
Aip10g02360 589 MobiDBLite consensus disorder prediction 114 188 - -
Aip10g02360 589 SUPERFAMILY Protein kinase-like (PK-like) 187 532 IPR011009 -
Aip10g02360 589 MobiDBLite consensus disorder prediction 1 189 - -
Aip10g02360 589 CDD STKc_MEKK1_plant 188 445 - -
Aip10g02360 589 PANTHER MAP KINASE KINASE KINASE 180 570 - -
Aip10g02360 589 PANTHER MAP KINASE KINASE KINASE 1 180 - -
Aip10g02360 589 Gene3D Transferase(Phosphotransferase) domain 1 186 465 - -
Aip10g02360 589 SMART serkin_6 189 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g02360 589 ProSiteProfiles Protein kinase domain profile. 189 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02360 Aip-Chr10 106967395 106971661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02360 175 447 MAP Kinase Kinase Kinase AT1G63700 67.883 5.70e-133 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aip10g02360 Pkinase 5.3e-73 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02360 10 106967395 106971661 Aip10g02360 10 106967395 106971661 ECH
Aip03g03457 03 112985090 112989117 Aip10g02360 10 106967395 106971661 PCT
Aip03g03185 03 103138096 103142597 Aip10g02360 10 106967395 106971661 PCT