Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02337 ATGGAAACAAACCACCGCAACACTATTTGCACATTCACAGATATTGATATCACTAATTGGAACAATAATGATCTTCCTCATCATGATTATGATGAAAATAAGAACATGGAAACAAGACAAGAAGAGGATCATAACAACCTCACTACTCTCAATGATAACCAAATTCCTCTTATGTCCTGGCCCAACCTTCAACAACAAAGACCAGCAATACCCTCACCGTCATCCTCAACTTCTAGAACCTTCTTTAGTGACATAATGGAGAACCAAGTGCAAGAAGAGGAAGAAGAAGAAGAAGAAGACGAAGAGCCTGAAGAAGAGTTAGGAGTCATGAAGGAGATGATGTACAGGATCGCCGCTATGCAGCCGGTGGACATCGACCCGGCTAGCGTTCGAAAGCCGAGGAGGCGAAACGTGCGAATAAGCGACGACCCTCAGAGCGTGGCAGCGCGTCACAGAAGGGAGAGGATCAGTGAGAGGATCCGAATCCTTCAGAGGTTAGTTCCAGGTGGCACCAAAATGGACACCGCTTCCATGCTCGACGAAGCCGTTCGATATGTTAAGTTCTTGAAACGCCAAATCAGGTTCCTCGAATCAAATCCAAATCAACTACCACCTAATTGGCCTTTTGCACCACTACTTAATATTAATAATATGCTTCACGCTCCTTCTGCTGCTGCCGCCACTTCCATGCCACCGCCACCGCCGCCGCCGGGGCTACCCGGATTTGGAACCCTAAGCAGCCATGGCCATCATGATTAG 759 0.473 METNHRNTICTFTDIDITNWNNNDLPHHDYDENKNMETRQEEDHNNLTTLNDNQIPLMSWPNLQQQRPAIPSPSSSTSRTFFSDIMENQVQEEEEEEEEDEEPEEELGVMKEMMYRIAAMQPVDIDPASVRKPRRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAVRYVKFLKRQIRFLESNPNQLPPNWPFAPLLNINNMLHAPSAAAATSMPPPPPPPGLPGFGTLSSHGHHD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02337 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 205 IPR036638 GO:0046983
Aip10g02337 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 211 IPR045843 GO:0003700|GO:0006355
Aip10g02337 252 SMART finulus 146 195 IPR011598 GO:0046983
Aip10g02337 252 Gene3D - 143 208 IPR036638 GO:0046983
Aip10g02337 252 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Aip10g02337 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Aip10g02337 252 Coils Coil 179 199 - -
Aip10g02337 252 MobiDBLite consensus disorder prediction 224 252 - -
Aip10g02337 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 211 - -
Aip10g02337 252 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02337 Aip-Chr10 105943154 105943912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02337 107 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 85.859 1.33e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip10g02337 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02337 - - aip:107620984 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02337 10 105943154 105943912 Aip10g02337 10 105943154 105943912 ECH
Aip03g03485 03 113766086 113766871 Aip10g02337 10 105943154 105943912 PCT