Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02336 ATGAGTGAAAGTGGCAGGAAACGCTCTTCAAAGTGGGATACAAGAGATGATCCTGATTTTGGACCTGATAGTAAGCACTTGCGTTCTGGATGGTCCTCTGGAGATGTTGCTGGCAGCAATAACTCAAAATGGTCTTATATGGAAGGAAATGACAAGATGAAACCTCGCATGAGTAAGGAACCTTTTTCTGGAGGCAGGGGTTCAAATAAAGATGATATTATGAATAAAGACTATAGATGTTTGGATGCAAAAATGGAGTGGGAGGCGGATGCAAGTTACAGCAGGAGACGCAGTCCATCCCCAAAAAGTGGTTGGAGCAGGTCGGGCAGTAGTAGAAGCAGAAGCCCTCCACATGGTTTCAAGTGGGATTCAGGAGCCAATGACAGAAATAGAACGAGGGCTGCAGAATCAAAGCAAATATGCAGAGATTTTGCTGTTGGAAAATGTAGAAGAGGAAGCCATTGCTATTTTCTTCACCATGATGACCAAAATTATGAGGATATTCGGGAAAGTAAAAACCGGGAAGATGGAGCTCCAAGATATTCTGCTTCACATGAGAGCAGGGAACATACTCTTAGGAGTAGATCCACTGAAGCTTGTGTTCATTTTGCAAAAGGCAGATGTAGAATGGGAGCATCATGCAAATATGTGCATCATAACAATTCTGATGAATATGGTAAGGGTACTCTGGATGAATTAACTAGAGAAAGGGAAAATGATGGAAGGCGCAGAGATAATTCTTTTGAGCAGGGTGGTGGCCACATGCCAAGCCGCAGTGGTGATACCCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAGCATTGTAGGTTTTCCCATGATAGGCAAGACAGAAGCTTAAGGGATGATAGATGGGGAAGCAATCTTTCTGGAGACCATCAGACCTTGGATAGACCAAAATTGAGTGATTCAGCTAGTCCTACTAGAAGGCTTAGAAGTGATAGATGGGGCACAGATGGCATTATGGCTGATAAGGATAAAGTATGGGACAGTCCAAACCGGAATGATATAGCTACCTATGATTCAGCAAAGTTGGTTGAAGAAAAACCTGGAAATATAGGTGCCACTGAGCATGAACAAACTGTATGGCCTGTGAAGGAAGGATGGGGTCATAGTTTAGACCAGAGCAGTGTGCAGGGTGAACCACCATTTTTAAGTGATAAGAAGGAAGCTGACCATTGGATAGCAGACAATGCTGGTGCCAGCATTCCCGTTTCCCAGTCCGTAGCTGCAGACATCTGGCCTGGGGACGCAAAAATGTCTCCTGATTGGAATTATAGAGCAGGATCTTCCACCCGTACGGAAGTAGAGCATGGACAGAACGATCGTGGGTTAACTCAAGGAAGTACATATCCAGCCACCACTGAACATGACAGAATACATTCTGCTGTTGTTTTTCCAGGGCAAGGTTTTAATCAGAATGTGCAAAATGTTAATCTTTTGCATTTGCCAAGCTGCCATGCAGTTGGACAAAATCAAGTGACAGTTCCCATTCTTCCTTCAAGAGCAGGAATTCCTGAAGGTATGCAAAAGCAAGAAGTCTGTGTTGAGAAAAAGTACACTGCTGAGCCAAATATCACAGGTGAAGGCTCATCACAGATTAGTTCAAGTAATCCTTCAACACAGGACACAGTAAGCAAAGAACAGCTTGCTCAACTTTCCAATCTCTCAGCCTCTCTTGCTCACATCCTTGGATCTGGTCAGCAGCTGCCACAACTTTATGCTGCCTTAAATTCTCATAATACAAATGACACTCCCTCCTTAGCCAACACGGAAGTGCCTGCTATGCCTGTTTCCAATACGTATGTCAAGCCAGATCCTGCTGTTGGATTTGTAAAGCAGTATGATCCAATGAGTGATAGCGTTGACCTAAATGATGCTGATGCAAGTGGAATCTGCCCAGTTATTTCTCCAAGTAAAAAAAGTGCAAATATAGAAATTTCATCACTGTTGTCTAACACTGGGAAACAAAATTGTGGTGATACTTCTAAGGCCCCCTCCTCAGAAGAACAACCTGCCAAGAATGAACATCTGACCCAATTGCAGCCAGGTCAAAACATTGAGATACAGAAGGAAACCAATGAAGCGGTAGCTGATGATAAGCCAAATCCTCAAGATGATCATAAAATTACAAAAGAGAATGGTCCTTCAGAAAACATAGACCACAATGGTGTTGAGGCCAATAAAAGCAAGGATGTGAAGGGGATTCGTGCTTTCAAATTTTCATTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACTTGGAAAGAAGGAAAAATCACTAAAGATGATTATAAAACAATTGTGAAGAAGGTTGTAGATAAAGTAACCGGTACCATGCAGGGAGCCCACATTCCTCAGACTCAAGAGAAAATTGACCATTATTTGTCGTTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCACAAGGCCTAG 2481 0.426 MSESGRKRSSKWDTRDDPDFGPDSKHLRSGWSSGDVAGSNNSKWSYMEGNDKMKPRMSKEPFSGGRGSNKDDIMNKDYRCLDAKMEWEADASYSRRRSPSPKSGWSRSGSSRSRSPPHGFKWDSGANDRNRTRAAESKQICRDFAVGKCRRGSHCYFLHHDDQNYEDIRESKNREDGAPRYSASHESREHTLRSRSTEACVHFAKGRCRMGASCKYVHHNNSDEYGKGTLDELTRERENDGRRRDNSFEQGGGHMPSRSGDTLCKFFANGNCRNGKHCRFSHDRQDRSLRDDRWGSNLSGDHQTLDRPKLSDSASPTRRLRSDRWGTDGIMADKDKVWDSPNRNDIATYDSAKLVEEKPGNIGATEHEQTVWPVKEGWGHSLDQSSVQGEPPFLSDKKEADHWIADNAGASIPVSQSVAADIWPGDAKMSPDWNYRAGSSTRTEVEHGQNDRGLTQGSTYPATTEHDRIHSAVVFPGQGFNQNVQNVNLLHLPSCHAVGQNQVTVPILPSRAGIPEGMQKQEVCVEKKYTAEPNITGEGSSQISSSNPSTQDTVSKEQLAQLSNLSASLAHILGSGQQLPQLYAALNSHNTNDTPSLANTEVPAMPVSNTYVKPDPAVGFVKQYDPMSDSVDLNDADASGICPVISPSKKSANIEISSLLSNTGKQNCGDTSKAPSSEEQPAKNEHLTQLQPGQNIEIQKETNEAVADDKPNPQDDHKITKENGPSENIDHNGVEANKSKDVKGIRAFKFSLVEFVKELLKPTWKEGKITKDDYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVHKA 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02336 826 MobiDBLite consensus disorder prediction 225 256 - -
Aip10g02336 826 ProSiteProfiles Zinc finger C3H1-type profile. 258 285 IPR000571 GO:0046872
Aip10g02336 826 ProSiteProfiles Zinc finger C3H1-type profile. 194 221 IPR000571 GO:0046872
Aip10g02336 826 Gene3D - 246 309 - -
Aip10g02336 826 SUPERFAMILY CCCH zinc finger 261 283 IPR036855 GO:0046872
Aip10g02336 826 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 824 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 284 324 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 704 725 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 704 735 - -
Aip10g02336 826 Pfam CCCH-type zinc finger 263 283 IPR041367 -
Aip10g02336 826 MobiDBLite consensus disorder prediction 662 686 - -
Aip10g02336 826 ProSiteProfiles Zinc finger C3H1-type profile. 135 162 IPR000571 GO:0046872
Aip10g02336 826 Gene3D - 130 232 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 170 194 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 90 137 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 33 47 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 96 117 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 1 74 - -
Aip10g02336 826 Pfam RNA-binding, Nab2-type zinc finger 140 159 - -
Aip10g02336 826 Pfam RNA-binding, Nab2-type zinc finger 199 218 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 1 24 - -
Aip10g02336 826 MobiDBLite consensus disorder prediction 305 324 - -
Aip10g02336 826 SUPERFAMILY CCCH zinc finger 195 219 IPR036855 GO:0046872
Aip10g02336 826 MobiDBLite consensus disorder prediction 225 249 - -
Aip10g02336 826 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Aip10g02336 826 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Aip10g02336 826 SMART c3hfinal6 194 220 IPR000571 GO:0046872
Aip10g02336 826 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02336 Aip-Chr10 105879991 105884055 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip10g02336 zf-CCCH_4 7.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02336 - K22909 gmx:100783856 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02336 10 105879991 105884055 Aip10g02336 10 105879991 105884055 ECH
Aip03g03486 03 113892416 113896010 Aip10g02336 10 105879991 105884055 ECH