Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02333 ATGGAATCTAAAGTAGGGGGCTTAGCCGCCCGCCTACCAATCAAAGAGGCTGAGAGTAAGCGTAAGCTCTTCGAGCTTCCCTTCATTCGCTTCGCGGGAGCCGCACAACACATAGCTGGCTTTCAGAGGGCCCATACTACCTGCCTAACCCCTCGCTCCGAGGGACCCACTCACACGGTCACACCATTCTCGTCTTCCTCTAGAGAGAGAGGCAAACTCTCTCAGAAAAATAGCGCTTTTCATTCCCCAGCCAAGAGGCTCATCGGCTTTAGCCGCCGGACGCAGGCAATTCACCCGCACGGTCAGCAGTCGCCGTGCGGGCCGCCGGCGAAGAAGTACAAGTCGATGACGGACATAATGGCGAGGGCGCCGTACGCCGTCGTGGAGCGCGAAGATTACGGCGACCTCAGCTGCGAGCAATGCGGCTCCGGCGAGCGGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAGAGGGTTCCACATGAAATGCGCGAGGCCTATCGTGGTTAGGGTTCCTATTGGATCCTGGCTTTGCCCTGAATGCGTTGGAAGCAACAACAGACAGAGAAGAATAAAAAGCTTCTCGCAGCGTAAGTTAATTGATTTCTTCGGGATTCAGAGGAGCGACAATGATCACGTTAGAGCTGCTTCTTCTCAAGATGCTAAGAAGCGTCGAAGACGATCACGCCCTCTGGTTATGCACAAGAGAAGGAGGAGATTATTACCATTTATTCCTTCAGAAGATTCGAACCAAAGAAATAAACAGATGAATTCACTTGCTACTGCTTTATCAGCATTGCATATGGATTTTAGCGATGACCTCAGATACTTGCCTGGAATGGCTCCTAGATCTGCTAATCAAGCCATATTAGAAGATGGTGGCATGCAGATTCTTTCAAAGGAAGATATGGAGACCTTGGAACACTGCAGAGCTATGTCTAGAAGAGGCGAATGTGCCCCCTTTCTAATTGTTTATGATGCACGCGAAGGCTATACTGTGGTGGCTGATGCTCCAATCAAGGATTTGACATTTATTGCGGAATACACGGGCGATGTGGATTACCTTAAGAATCGAGAAAGTGATGATTGTGACAGTATGATGACCCTTCTTTTATCAAGTGATCATTCTCAAAGTCTTGTCATCTGTGCTGATAAACGCGGAAACATTGCTAGGTTTATTAATGGCATCAACAATCATACTCCGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCCTTTTGGTTGCTACTCGTGATATTTCTAAGGGCGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATACCCCACACATCATTTTGTCTAA 1365 0.4813 MESKVGGLAARLPIKEAESKRKLFELPFIRFAGAAQHIAGFQRAHTTCLTPRSEGPTHTVTPFSSSSRERGKLSQKNSAFHSPAKRLIGFSRRTQAIHPHGQQSPCGPPAKKYKSMTDIMARAPYAVVEREDYGDLSCEQCGSGERPEELLLCDKCDRGFHMKCARPIVVRVPIGSWLCPECVGSNNRQRRIKSFSQRKLIDFFGIQRSDNDHVRAASSQDAKKRRRRSRPLVMHKRRRRLLPFIPSEDSNQRNKQMNSLATALSALHMDFSDDLRYLPGMAPRSANQAILEDGGMQILSKEDMETLEHCRAMSRRGECAPFLIVYDAREGYTVVADAPIKDLTFIAEYTGDVDYLKNRESDDCDSMMTLLLSSDHSQSLVICADKRGNIARFINGINNHTPEGRKKQNCKCVRYNVNGECRVLLVATRDISKGERLYYDYNGYEHEYPTHHFV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02333 454 ProSiteProfiles Zinc finger PHD-type profile. 135 185 IPR019787 -
Aip10g02333 454 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 82 452 - -
Aip10g02333 454 SUPERFAMILY FYVE/PHD zinc finger 126 189 IPR011011 -
Aip10g02333 454 MobiDBLite consensus disorder prediction 212 232 - -
Aip10g02333 454 Pfam SET domain 367 442 IPR001214 GO:0005515
Aip10g02333 454 ProSitePatterns Zinc finger PHD-type signature. 138 182 IPR019786 -
Aip10g02333 454 SMART PHD_3 137 183 IPR001965 -
Aip10g02333 454 Gene3D SET domain 225 454 IPR046341 -
Aip10g02333 454 SUPERFAMILY SET domain 314 442 IPR046341 -
Aip10g02333 454 Pfam PHD-finger 138 183 IPR019787 -
Aip10g02333 454 ProSiteProfiles SET domain profile. 320 442 IPR001214 GO:0005515
Aip10g02333 454 PANTHER HISTONE ACETYLTRANSFERASE 82 452 - -
Aip10g02333 454 CDD SET_ATXR5_6-like 317 454 - -
Aip10g02333 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 198 IPR013083 -
Aip10g02333 454 MobiDBLite consensus disorder prediction 49 80 - -
Aip10g02333 454 SMART set_7 320 448 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02333 Aip-Chr10 105761918 105770889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02333 109 224 C2H2 Transcription Factor Family AT3G01460 33.051 1.34e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip10g02333 SET 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02333 K24406 - gmx:100785817 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02333 10 105761918 105770889 Aip10g02333 10 105761918 105770889 ECH