Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02315 ATGTATGCTTCAACTTCATTCACTTCACCTCTGATCCATGAACTTCTTTTAGAATTCCACTCAAGAAGGTTACTCTTACACACTACCCCGTCATTCAACCAATCACCAAGCTCATCACCCAACCCACCAAATAGCCCCCAAAGCTCATCACCAGAATCATCATACCTTGGAGATGGAACCTTTGATGCAAATGTTGTAATGGTACTCTCAGTACTTTTATGTGCTCTAATATGCTCACTTGGATTAAACTCCATCATAAGGTGTGCATTAAAGTGTTCCAGCTTAGTTGTGAGTACCAATAATAGTGATAGTAATAATAACCACCACACTTCATCATCAAGAGTGGTCAACACCGGAATCAAGAAGAAAGCACTCAAGACTTTTACAACACTAAGTTACTCAAATGAACTCAACCTTCCTAGTTTGGACTCAGAGTGTGTGATATGCTTGTCGGATTTCGCCCTCGGCGACCGGTTGCGGATTTTGCCTAAGTGCAACCATGGTTTCCACATAAAGTGCATTGATAAATGGTTGAGTTCGCATTCTTCTTGCCCCAAATGCAGACACTGCCTTATGGAGACTTGCCACAAGATTGTTGGGGCTACTACCTCATCATCATCATCACAATTGCCAGAAACTATTCTTACCATAGCACCATTGGACCCAGAACGTTTGAAGAGAGAGAAAGAGAAGCAGAGACTTAAAGAGAAGGAAGCCTCGTCGTGCCTGGCCGTCGCCATCGCGACTCACTGTTGCCCTTGCAGCACCGTGATTCACCGTCGCCCTTGCAGCGCCGCGATTCACTGTCACCCTTGCAGCGCTGTGACTCCCCCTCGCCATCACCGAAACTCCTCTCACAGCAACGCGCCTGACCCTCGCCCTCGTGTTCCTCGTCATCATCGGGGAGGTGATGGTGGTGGTGGTGGTATTGCTGCTACTGACCTCGCCGCCACTTTACGTCCTCATCGCTCGCCGTTCTTCCACTTCGCCGTTTCTTTGCAACGCCGTCGTCCACCTCACTCGTCCTTGGCATTGCCTTCCTCCTCGTCGCTCAGTCCGCATCCTCGCTTCGTCCTACTCCTCGTCGCGTTAGTCGTCATCAGCATTGCTAATTCTTCTTTGTCGGAAGTGGACCTCAACCATGGAAAAGGGGGTAATCTTACTCTCAAAGACAAATTTATTGCGGCAGAACCAAAGAAAGGCAATAACAACACCAAAGAGACAAGGCCAGTGACTTGGGCGCCCCAGGTTGCTCTCCAACCAATGAGCGGCGTCCGTGTTGAAGAAGGAATGTGCTTGGGCAGCAGGGATGAAGGCAttccatatgttcctggcaaaataacagtcatgtaa 1353 0.476 MYASTSFTSPLIHELLLEFHSRRLLLHTTPSFNQSPSSSPNPPNSPQSSSPESSYLGDGTFDANVVMVLSVLLCALICSLGLNSIIRCALKCSSLVVSTNNSDSNNNHHTSSSRVVNTGIKKKALKTFTTLSYSNELNLPSLDSECVICLSDFALGDRLRILPKCNHGFHIKCIDKWLSSHSSCPKCRHCLMETCHKIVGATTSSSSSQLPETILTIAPLDPERLKREKEKQRLKEKEASSCLAVAIATHCCPCSTVIHRRPCSAAIHCHPCSAVTPPRHHRNSSHSNAPDPRPRVPRHHRGGDGGGGGIAATDLAATLRPHRSPFFHFAVSLQRRRPPHSSLALPSSSSLSPHPRFVLLLVALVVISIANSSLSEVDLNHGKGGNLTLKDKFIAAEPKKGNNNTKETRPVTWAPQVALQPMSGVRVEEGMCLGSRDEGIPYVPGKITVM 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02315 450 MobiDBLite consensus disorder prediction 276 310 - -
Aip10g02315 450 MobiDBLite consensus disorder prediction 284 302 - -
Aip10g02315 450 Pfam Ring finger domain 145 188 IPR001841 -
Aip10g02315 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 193 IPR013083 -
Aip10g02315 450 SUPERFAMILY RING/U-box 126 193 - -
Aip10g02315 450 MobiDBLite consensus disorder prediction 30 54 - -
Aip10g02315 450 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 228 - -
Aip10g02315 450 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Aip10g02315 450 PANTHER RING-H2 FINGER PROTEIN ATL78 1 228 IPR044602 GO:0016567|GO:0016740
Aip10g02315 450 CDD RING-H2_PA-TM-RING 145 188 - -
Aip10g02315 450 SMART ring_2 146 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02315 Aip-Chr10 104079800 104092923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02315 44 192 C3H Transcription Factor Family AT3G10910 43.046 1.24e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02315 K19040 - gmx:100807227 272.322