Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02312 ATGGTGAAGGCAGGATTTGCCGGTGATGATGCACCCAGGGCTGTGTTTCCCAGTATAGTTGGCCGACCTCGCCACACTGGTGTTATGGTTGGAATGGGTCAAAAGGATGCCTATGTAGGTGATGAAGCCCAATCCAAAAGAGGTATTCTTACTCTCAAATATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCATACATTCTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCTGTGCTTCTAACGGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCCGCCATGTATGTAGCCATCCAAGCTGTTCTCTCCCTCTATGCAAGTGGTCGCACAACTGGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGGTATGCACTTCCACATGCCATCCTTCGATTGGATCTTGCAGGGCGTGATTTAACTGACTCTCTGATGAAGATCCTCACCGAGAGAGGGTACATGTTCACCACCTCAGCTGAACGGGAAATTGTCCGAGACATAAAGGAGAAGCTTGCATATGTTGCCTTGGATTATGAGCAAGAACTTGAGACTGCAAAGAGCAGTTCTTCAGTGGAGAAAAACTATGAGCTTCCTGATGGACAAGTTATCACAATTGGAGCCGAGAGGTTCCGTTGTCCGGAAGTCCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGTATTCATGAAACCACCTACAACTCTATCATGAAGTGTGATGTTGATATCAGGAAGGATCTGTATGGCAACATTGTTCTTAGTGGTGGGTCTACGATGTTCCCTGGTATTGCTGACCGTATGAGCAAAGAGATCACTGCGCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCCATCCTTGCATCACTCAGCACCTTCCAACAAATGTGGATATCAAAGGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAATGCTTCTAA 1083 0.47 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02312 360 Gene3D - 1 354 - -
Aip10g02312 360 PRINTS Actin signature 34 45 IPR004000 -
Aip10g02312 360 PRINTS Actin signature 100 113 IPR004000 -
Aip10g02312 360 PRINTS Actin signature 221 237 IPR004000 -
Aip10g02312 360 PRINTS Actin signature 11 20 IPR004000 -
Aip10g02312 360 PRINTS Actin signature 125 144 IPR004000 -
Aip10g02312 360 PRINTS Actin signature 46 68 IPR004000 -
Aip10g02312 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Aip10g02312 360 Pfam Actin 2 360 IPR004000 -
Aip10g02312 360 SUPERFAMILY Actin-like ATPase domain 132 360 IPR043129 -
Aip10g02312 360 PANTHER ACTIN 1 359 IPR004000 -
Aip10g02312 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Aip10g02312 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Aip10g02312 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Aip10g02312 360 SMART actin_3 1 360 IPR004000 -
Aip10g02312 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Aip10g02312 360 PANTHER ACTIN-7-LIKE 1 359 - -
Aip10g02312 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Aip10g02312 360 Gene3D - 123 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02312 Aip-Chr10 103833351 103834707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02312 1 360 Cytoskeleton Gene Families AT5G09810 98.889 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02312 K10355 - gmx:100789000 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02312 10 103833351 103834707 Aip10g02312 10 103833351 103834707 ECH