Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02303 ATGGATTTGGATGATTTCCGATCCATATTGGATACTGCCGGCGTTGACGTTTGGCTCTTCATCGACACCGCCATCACCGTCGCCTCCTTGGATTGCGGTGACGAGCTGAGGCGACGGAGGGATGGAATCATAGAACGAATCTTCGCTGCCACAACACCTCCTCTGCCGTGCCGGAACTGCGACGGCGATCGTAACCTGAGGTCCAATGGCCACCAAATCAAGAAACGCCTCAGCCCTAGCCCTAGCCCTCAGCGACAACACAGCCACCACCAGCAACGTCGTGGTGGCCGTGGTGCCGCCGCTGCAGTTTCTCCCTCAACGCCGCAGTCTCTCGGAGATGATGATGACAACGGCCACGCCGACGCCGACGCCGCCGAAGACGACCGTGAAGATTTGGATCCTTACGGCGGCTTGTTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGAACCTGACCAGTCTGAAGAATCGTTGGTGGAGCTGCTGCAAAATCTCGCAGACATGGATATTACATTCCAAGCGTTAAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGCGGAAGCATTCCTCCAATGACGTTCGCAGATTGGTGAAGCTACTTGTGAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAGGTTGAATCAACCGGGTGGAGCAGCTTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAACCACCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAGTGAATGGAAGTTCTGGGTCTGA 801 0.5393 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPLPCRNCDGDRNLRSNGHQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNGHADADAAEDDREDLDPYGGLFDDEQKKILEIKEQLEEPDQSEESLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVRLNQPGGAASLMADGDSPPLKTTQNGHHQIPDFAYSPNPHSEWKFWV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02303 266 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 143 224 IPR035441 -
Aip10g02303 266 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 225 IPR035441 -
Aip10g02303 266 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 260 IPR044790 -
Aip10g02303 266 MobiDBLite consensus disorder prediction 73 137 - -
Aip10g02303 266 Pfam TFIIS helical bundle-like domain 166 215 IPR017923 -
Aip10g02303 266 SMART TFS2_5 146 217 IPR003617 GO:0005634
Aip10g02303 266 ProSiteProfiles TFIIS N-terminal domain profile. 141 218 IPR017923 -
Aip10g02303 266 CDD TFIIS_I 143 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02303 Aip-Chr10 103129109 103133103 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aip10g02303 Med26 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02303 - - aip:107622503 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02303 10 103129109 103133103 Aip10g02303 10 103129109 103133103 ECH
Aip03g03520 03 114967374 114969865 Aip10g02303 10 103129109 103133103 ECH