Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02281 ATGGAGTTCGACGAGTATGACTACTTGGAGAAGACGGTGGAGGACCATGACGACAGAGATTCGTCTAAGAAGACCAAGAAAGACAGCTCCGAGAAAACCTACCGGAAGCGCGACGAGCTCGACGACGATCTAGACGCTGCCGCCTACGACGGGCGCATCAAGAAGTCCAGGGCCGACGAAGAGAACGGCTCCAAGAAGGATCGGGATGGCCGCGATAGGGAGCGGTCCTCCCGCGACAAGGACCGCCACAGGCACCGCAGCAGCGACAGGGAAATAGACGGTGAGCGGAGCAGCAGAGACAGAGATAGAGACAACAGAGACAGAGACAGAGAGCGTGATTTTGACTCGAGAGATGGCCGGAGACAAAGGGAAAAGAAAGAAGCTGCAGAGCCTGAGGCAGATCCCGAAAGGGATCAGCGAACTGTTTTTGCCTACCAGATGCCTTTGAAGGCAACAGAGAGGGATGTTTATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTAGACAGGAAACTGTATGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAATTGCCACTTGATCTGGAAACTGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATTCCAAGGCAGCTCTGAGTTTAAATGGAAAACTGGAAATTGCTGGCAGGACTATCAAGGTCTCATCTGTAACTGATCATGTTGGAAGCCAAGATACAACTGCGAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAACGCTCAATCAAGAGCTTTACTTATGCAGAAGCTGGATCGCTCTGGCATTGCTGCTAGCATTGGCGTTCCACCAGTTGTGAATGGGTCGGCCCCTGCACATCAAGCTGTTAGCTTGCCTATTGGTAATCCAGGCATAATACCAGCACCAACTCTCCCAACACAACTTATGACTAACCCAGTTGCCGAGCCGGTTGGAACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCGGCCACTGAGACAGAACCAGATTTTGATTTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAGTATGGGCGGGTGAAGCATATCTCTGTTGACAAAAACAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCCGCTCAACGTGCATTGCACCTGAGGTGGTTTGCACGTAGATTGATTTCAGCTTTGTTCATGCAACCTCAGATGTATGAAGAGAAGTTTAAAGGGGAGGTTTGA 1524 0.4797 MEFDEYDYLEKTVEDHDDRDSSKKTKKDSSEKTYRKRDELDDDLDAAAYDGRIKKSRADEENGSKKDRDGRDRERSSRDKDRHRHRSSDREIDGERSSRDRDRDNRDRDRERDFDSRDGRRQREKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHSKAALSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGVPPVVNGSAPAHQAVSLPIGNPGIIPAPTLPTQLMTNPVAEPVGTPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHISVDKNSAGFVYLQFETVEAASAAQRALHLRWFARRLISALFMQPQMYEEKFKGEV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02281 507 MobiDBLite consensus disorder prediction 9 139 - -
Aip10g02281 507 Gene3D - 66 226 IPR012677 -
Aip10g02281 507 PANTHER CC1-LIKE SPLICING FACTOR 1 104 - -
Aip10g02281 507 SUPERFAMILY RNA-binding domain, RBD 408 495 IPR035979 GO:0003676
Aip10g02281 507 CDD RRM1_RBM39_like 141 213 - -
Aip10g02281 507 SMART rrm1_1 243 316 IPR000504 GO:0003723
Aip10g02281 507 SMART rrm1_1 414 491 IPR000504 GO:0003723
Aip10g02281 507 SMART rrm1_1 141 213 IPR000504 GO:0003723
Aip10g02281 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 209 IPR000504 GO:0003723
Aip10g02281 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 314 IPR000504 GO:0003723
Aip10g02281 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 436 488 IPR000504 GO:0003723
Aip10g02281 507 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 71 507 - -
Aip10g02281 507 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 104 - -
Aip10g02281 507 CDD RRM2_RBM23_RBM39 244 316 - -
Aip10g02281 507 PANTHER CC1-LIKE SPLICING FACTOR 71 507 - -
Aip10g02281 507 TIGRFAM SF-CC1: splicing factor, CC1-like family 26 503 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aip10g02281 507 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 335 431 IPR029123 -
Aip10g02281 507 Gene3D - 408 506 IPR012677 -
Aip10g02281 507 CDD RRM3_RBM39_like 412 494 - -
Aip10g02281 507 SUPERFAMILY RNA-binding domain, RBD 241 319 IPR035979 GO:0003676
Aip10g02281 507 Gene3D - 238 334 IPR012677 -
Aip10g02281 507 SUPERFAMILY RNA-binding domain, RBD 85 215 IPR035979 GO:0003676
Aip10g02281 507 MobiDBLite consensus disorder prediction 1 140 - -
Aip10g02281 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 217 IPR000504 GO:0003723
Aip10g02281 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 320 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02281 Aip-Chr10 102398313 102403499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02281 171 423 Eukaryotic Initiation Factors Gene Family AT1G49760 26.592 2.86e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02281 K13091 - gmx:100802446 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03529 03 115160017 115165520 Aip10g02281 10 102398313 102403499 PCT