Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02272 ATGGGGTGGCGAATCCTCAAGAGAAAGGAAACAAGGGAGGAGGAGATGTCTGCCATGGTTTCGGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCGGTGCAGATGACGATTATTCACTTCCAACAAGTAACATGGCTTATGGTTCTTCAACATTTTCTAATTATGTTGTTGGAAGTGGCTCTTCTTCTATCAAGAGAACTAGGCAGCAAGATGATATATCCTTTGTTGACCACTTCTCTTCATCACATGGTGTAGCTTCTTCATCCCCTACTACAACAATGAATAGAGAATGTTCAAGAGAAAGTGGAAGTGGGAGTGGAGAGATGGGAGGAGGAAACAGGGGAAGGGCAGTGTATGAATACAGAGCAAGAGAAGAGAACGTGAGAGAGGAAGAGCCAAGAAGGAAATACAGAGGCGTCAGGCAGAGGCCATGGGGCAAGTGGGCAGCCGAGATCAGAGACCCATTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTCGACACTGCCGAGGCTGCCGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCCGGGGCAACAAGGCCAAACTCAACTTCCCCGAAAATGTCACGCTCCTCCGCCACGCGCCACCGCAAATCACTACTTCTTCGCTCGTGGCTATTCCAACTTCCACTGAGGCCATTGTTCACAGTGAGCCTCTTATTAGCACTACTTTGCATGGTTCTTCTTCTTCCGCGGGTTTGTATGGGAATTTCCCCACCATGGATTCCACTATGACGGTTATGGCGTCAAGTGTGGCTTCTCATCTTCGACATTCTTCTCCGTCGTCAACGCAAGCTTCGCCGCCGTTCTTGTCTTCGTCTTCTGCGTTCGGTTCCACTACGCAGTTGCCGGCGGCGTGGTCATCAGCTTCCGGTAACAGCTCTTCTTCGTCGGGATAG 924 0.5097 MGWRILKRKETREEEMSAMVSALTHVVSGEVPTGADDDYSLPTSNMAYGSSTFSNYVVGSGSSSIKRTRQQDDISFVDHFSSSHGVASSSPTTTMNRECSRESGSGSGEMGGGNRGRAVYEYRAREENVREEEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPQITTSSLVAIPTSTEAIVHSEPLISTTLHGSSSSAGLYGNFPTMDSTMTVMASSVASHLRHSSPSSTQASPPFLSSSSAFGSTTQLPAAWSSASGNSSSSSG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02272 307 SMART rav1_2 137 200 IPR001471 GO:0003700|GO:0006355
Aip10g02272 307 SUPERFAMILY DNA-binding domain 137 195 IPR016177 GO:0003677
Aip10g02272 307 Gene3D AP2/ERF domain 136 196 IPR036955 GO:0003700|GO:0006355
Aip10g02272 307 MobiDBLite consensus disorder prediction 266 286 - -
Aip10g02272 307 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Aip10g02272 307 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Aip10g02272 307 MobiDBLite consensus disorder prediction 81 116 - -
Aip10g02272 307 Pfam AP2 domain 137 186 IPR001471 GO:0003700|GO:0006355
Aip10g02272 307 CDD AP2 137 196 IPR001471 GO:0003700|GO:0006355
Aip10g02272 307 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 10 303 - -
Aip10g02272 307 PANTHER DNA-BINDING DOMAIN 10 303 IPR044808 GO:0003700|GO:0009873
Aip10g02272 307 MobiDBLite consensus disorder prediction 81 103 - -
Aip10g02272 307 ProSiteProfiles AP2/ERF domain profile. 137 194 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02272 Aip-Chr10 101830921 101832883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02272 11 231 AP2-EREBP Transcription Factor Family AT5G64750 42.213 3.59e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g02272 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02272 - - aip:107621817 495.352