Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02242 ATGGAGTTGGCCGCCAAGCTCCACCACCTCGATCTCACTTCTGCCTTTCTCAGCGGTGGCTCCGTTATCTTCGAACCTCCTAAACCTCTCTCCCGCCCACCCCTTCATCTTCGCCCAGTTCGCATCAACAACGCTCACTTCACTAACCCAACAACAACAAGAAGAAGAAGATTCTTCGACGCCATAAGACCTACCAATTCCACTACCACTCTCCGTTTCTCCGCCGTGGCCACCGACGACACCTCCCTCGCCGAAACGACGATCGAACAACAAGACGACATCGAGTCCCTCCTCTCCGAACCTTCTTCCAACGACTATGACTTCGATAAACGGCGCGCCAACAAGCAATCCACTACGGGAGCTTCCAGCGTTTCTTCGGGGGTAAAATTGGAAAACGTTACCAAGAGCTACAAGGGTGTAACGGTTTTGAAAGACGTGAGCTGGGAAGTGAAGAAGGGAGAGAAAGTGGGCCTCGTTGGCGTTAACGGTGCCGGTAAAACCACGCAGATGAGGATTATTGCGGGTCAAGAAGAACCCGATTCAGGTAACGTCATTAAAGCCAAACCGAACATGAAAATCGCATTTTTGAGCCAGGAATTCGAGGTTTCGCCCAGTAAGACGGTGAGGGAAGAGTTCACGAGCGCGTTCAAGGAGGAGATGGAGATAGCGGTGAAGCTTGACAAGGTTCAGAAGGCTCTAGAAGGTGCCGTGAATGACATGGATTTGATGGGGAGGCTTCTTGATGAGTTTGATTTGCTTCAGAGAAAGGCACAGGCTTTGGATTTGGATGAGGTTGATGCCAAGATAAGTAAGTTGATGCCTGAGCTTGGGTTTGCAGCTGAAGATTCTGATAGGTTGGTTGCTTCTTTTAGCAGTGGGTGGCAGATGAGAATGTCTCTTGGGAAAATTTTACTTCAGGAGCCAGATTTGTTGTTGTTGGATGAGCCGACGAATCACCTTGACCTTGATACCATTGAGTGGCTCGAAGAGTATCTTAACAAGCAGGATGTCCCCATGGTTATCATTTCCCATGACAGAGCATTTCTTGATCAGCTGTGCACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGGAATTATTCTCAGTTTATACTTTCAAAGGCAGCATGGATTGAGGCACAGTACGCCGCATGGGAAAAGCAGAAGAAAGAAATTGAGCTGACCAAAGATTTAATTAGTAGGTTAGGTGCTGGAGCAAATTCCGGCCGTGCTTCATCTGCCGAGAAGAAGCTGGAGAGACTTCAGGATGAGGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGCGGAAGGAGTGGAAGATCTGTTGTAACAATTAAGAACTTGGAGTTTGCCTTTGAGGATAAGACACTTTTCAAGAAGGCAAATCTTACAATTGAAAGGGGAGAAAAGATTGCAATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTATTGAAATTGATAATGGGTATAGAGAAGCCGATGGGGGGTGAGGTTGTGCTTGGGGAGCATAATGTATTACCTAACTATTTTGAGCAAAATCAGGCTGAGGCACTGGATCTGGACAAGACAGTGCTTCAGACGGTAGAAGAAGCTGCAGAGGACTGGAAGATTGATGATATCAAAGGACTTCTTGGCCGATGTAATTTTAAAGCTGATATGCTTGACCGAAAAGTTTCCCTATTGAGTGGTGGTGAGAAGGCACGGTTGGCTTTTTGCAAATTCATGGTAAAGCCATCAACTCTACTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAAGCAATAAATGAGTACGAGGGCACTGTTATCACTGTGTCTCATGATCGATACTTTATAAAACAAATAGTTAATAGAGTTATAGAAGTTAAAGATGGCACCTTACAGGATTATGCAGGCGATTACAATTATTATTTAGAGAAGAACCTTGACGCCAGGGAGAGAGAGCTCGAACGGGAAGCAGAGCTTGAGGACAAAGCTCCTAAGGTGAAAGCCAAGTCTAAGATGTCTAAGGCTGAGAAAGAAGCACGGAAGAAACAAAAGATGCAAGCCTTTCAGGCAGCAAAACAGAAGTCTAAAAGCGCCAAGAATGCCAAGAGGTGGAAGTGA 2169 0.4578 MELAAKLHHLDLTSAFLSGGSVIFEPPKPLSRPPLHLRPVRINNAHFTNPTTTRRRRFFDAIRPTNSTTTLRFSAVATDDTSLAETTIEQQDDIESLLSEPSSNDYDFDKRRANKQSTTGASSVSSGVKLENVTKSYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGQEEPDSGNVIKAKPNMKIAFLSQEFEVSPSKTVREEFTSAFKEEMEIAVKLDKVQKALEGAVNDMDLMGRLLDEFDLLQRKAQALDLDEVDAKISKLMPELGFAAEDSDRLVASFSSGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQFILSKAAWIEAQYAAWEKQKKEIELTKDLISRLGAGANSGRASSAEKKLERLQDEELVEKPFERKQMKIRFPERGRSGRSVVTIKNLEFAFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGIEKPMGGEVVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWKIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIKQIVNRVIEVKDGTLQDYAGDYNYYLEKNLDARERELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKSAKNAKRWK 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02242 722 SMART AAA_5 152 367 IPR003593 -
Aip10g02242 722 SMART AAA_5 479 647 IPR003593 -
Aip10g02242 722 ProSitePatterns ABC transporters family signature. 574 588 IPR017871 GO:0005524
Aip10g02242 722 Coils Coil 682 711 - -
Aip10g02242 722 Gene3D - 417 684 IPR027417 -
Aip10g02242 722 Gene3D - 124 409 IPR027417 -
Aip10g02242 722 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 455 670 IPR003439 GO:0005524
Aip10g02242 722 CDD ABCF_EF-3 128 358 - -
Aip10g02242 722 Pfam ABC transporter 143 318 IPR003439 GO:0005524
Aip10g02242 722 Pfam ABC transporter 471 602 IPR003439 GO:0005524
Aip10g02242 722 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 61 712 - -
Aip10g02242 722 MobiDBLite consensus disorder prediction 672 702 - -
Aip10g02242 722 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 128 386 IPR003439 GO:0005524
Aip10g02242 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 363 IPR027417 -
Aip10g02242 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 660 IPR027417 -
Aip10g02242 722 MobiDBLite consensus disorder prediction 672 722 - -
Aip10g02242 722 MobiDBLite consensus disorder prediction 94 125 - -
Aip10g02242 722 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 61 712 - -
Aip10g02242 722 Pfam ABC transporter 357 444 IPR032781 -
Aip10g02242 722 ProSitePatterns ABC transporters family signature. 290 304 IPR017871 GO:0005524
Aip10g02242 722 CDD ABCF_EF-3 455 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02242 Aip-Chr10 100383826 100388029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02242 452 672 Calmodulin-binding Proteins AT2G36910 25.101 8.36e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02242 - - adu:107470294 1303.89