Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02240 ATGGCGCCGAAGCAGAGAGCAGCAAGGAAGGTCGGCAGGAACCCTGAACTGGTGCGGGGGATCGGGAAGTACTCTCGGTCTCAGATGGCTAGCATTACTCCTGGGACAGTGTTGATTCTTCTTGCTGGAAGATTCAAGGGGAAGAGAGTTGTGTTCCTCAAGCAGCTTCCTTCTGGGCTGCTTCTTGTGTCTGGACCCTTCAAGATTAATGGAGTTCCGTTGAGACGTGTGAATCAGTCGTATGTTATTGCCACATCAACCAAAGTAGATGTGTCTGCTTGTAACGTGGAGAAATTCGATGACAAATACTTTTCAAAGGAAGTCCAGAAAAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAGTCCGAGAAGGAGGAGAAGAAGACCCTCCCTCAAGACAAGAAGGATGACCAGAAGACTGTTGATTCTGCTTTGATAAAAGCCATCGAGAGTGTTCCAGACTTGAAGTTTTACCTTGGTGCTAGGTTTTCTTTGAAGCAAGGCCAGAAGCCTCATGAATTAGTCTTCTAG 531 0.4689 MAPKQRAARKVGRNPELVRGIGKYSRSQMASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIATSTKVDVSACNVEKFDDKYFSKEVQKKKKKGEGEFFESEKEEKKTLPQDKKDDQKTVDSALIKAIESVPDLKFYLGARFSLKQGQKPHELVF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02240 176 SUPERFAMILY Translation proteins SH3-like domain 30 120 IPR008991 -
Aip10g02240 176 CDD KOW_RPL6 30 176 IPR041997 -
Aip10g02240 176 Pfam Ribosomal protein L6, N-terminal domain 5 31 IPR005568 GO:0003735|GO:0005840|GO:0006412
Aip10g02240 176 MobiDBLite consensus disorder prediction 115 139 - -
Aip10g02240 176 PANTHER 60S RIBOSOMAL PROTEIN L6 1 29 - -
Aip10g02240 176 PANTHER 60S RIBOSOMAL PROTEIN L6 30 176 - -
Aip10g02240 176 PANTHER 60S RIBOSOMAL PROTEIN L6 30 176 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aip10g02240 176 PANTHER 60S RIBOSOMAL PROTEIN L6 1 29 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aip10g02240 176 Pfam Ribosomal protein L6e 69 176 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aip10g02240 176 ProSitePatterns Ribosomal protein L6e signature. 70 88 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aip10g02240 176 Gene3D - 30 114 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02240 Aip-Chr10 100295835 100297038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02240 1 29 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 72.414 2.29e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02240 K02934 - cit:102608733 239.195