Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02221 ATGTCCAGAGAAAGGGAGAGATTTGAGGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATAATGTTTCAAGTCAAATGGGAAGAAGACACATGTTAGGGCCAGCAGGAACCCTAAACACAATTACACCATGTGCAGCATGCAAGCTACTGCGACGAAGATGCGCACAAGAATGCCCCTTCTCTCCATATTTCTCACCTCATGAGCCCCAAAAGTTCGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGAGGTACCGGAGTGCCAAAGAGCTGATGCAGCGAATAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCAACATTGCAGCATCAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTGAGGTCAGAAATACTTAAATACAAACTCAGAGAAGCTAATAACAATATCATTATTCCCTCCTCCCACCATCATCTTCCTATGCTCCCTTCATCCGGGGCTGTTTCCGTCACTGCTCCCCCACCCCCGCCTCCTCCTCCGCCGCCACCACCACTTCCTCCTAATTCTCTCCCTCCCATTTCTTCCTCTTCTTCCTCCATGTACATCCAACAACAACAGAGGCCTCCCACCAACTATAGCAGAATTCCAAGTGACAATATTTCTTATTTTGGTTAA 690 0.4638 MSRERERFEEIGKKIKREGDNVSSQMGRRHMLGPAGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISTLQHQVQSLQAELNAVRSEILKYKLREANNNIIIPSSHHHLPMLPSSGAVSVTAPPPPPPPPPPPPLPPNSLPPISSSSSSMYIQQQQRPPTNYSRIPSDNISYFG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02221 229 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Aip10g02221 229 MobiDBLite consensus disorder prediction 167 229 - -
Aip10g02221 229 MobiDBLite consensus disorder prediction 174 196 - -
Aip10g02221 229 MobiDBLite consensus disorder prediction 197 229 - -
Aip10g02221 229 PRINTS Wilm's tumour protein signature 125 141 - -
Aip10g02221 229 PRINTS Wilm's tumour protein signature 174 188 - -
Aip10g02221 229 Coils Coil 122 149 - -
Aip10g02221 229 Pfam Lateral organ boundaries (LOB) domain 43 140 IPR004883 -
Aip10g02221 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 22 229 - -
Aip10g02221 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 22 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02221 Aip-Chr10 99747220 99748056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02221 28 175 AS2 family AT2G40470 82.432 3.31e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip10g02221 LOB 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02221 - - gmx:100790799 327.405