Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02185 ATGGCAATTATAGCAGCCTCTGCCATCTCCCTTCTCTTCATTGCTCTCAATCTATGCCTTAGAGGCACATTTGCTGACTATGGTGGAGGATGGCAAGGTGGCCATGCCACATTTTATGGTGGTGGAGATGCATCCGGCACAATGGGTGGTGCTTGTGGCTATGGAAACTTGTATAGCCAAGGATATGGGACTAACACTGCAGCACTCAGCACTGCTCTATTCAACAATGGCTTGAGCTGCGGGTCTTGCTATGAGATGAGGTGTAACGGTGACCCCAAATGGTGCCTCCCCGGCGCCATCACGGTCACCGCCACGAACTTCTGCCCACCTAACTTTGCCTTGTCTAATGACAATGGTGGCTGGTGCAACCCTCCCCTCCAACACTTTGATCTTGCTGAGCCTGCTTTCCTTCAAATTGCTCAATACAGAGCCGGAATTGTCCCCGTTTCTTTCAGGAGAGTCCCCTGTGTCAAGAAAGGAGGAATAAGGTTTACAGTGAATGGACACTCATACTTCAACCTGGTTCTGATCACAAATGTGGGCGGAGCCGGAGACATTCACTCGGTGTCTATCAAGGGCTCGAAGACAGGGTGGCAAACCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACTCATACCTCAATGGCCAGAGCCTCTCCTTCCAAGTCACAGCCAGTGATGGCAGAACAGTCACTAGCTACAATGTTGCTCCTTCCAATTGGCAATTTGGACAAACATTTGAGGGGTCACAGTTTTAG 762 0.5052 MAIIAASAISLLFIALNLCLRGTFADYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCNGDPKWCLPGAITVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTVNGHSYFNLVLITNVGGAGDIHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSYNVAPSNWQFGQTFEGSQF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02185 253 Gene3D - 20 156 IPR036908 -
Aip10g02185 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Aip10g02185 253 Pfam Lytic transglycolase 66 151 IPR009009 -
Aip10g02185 253 PANTHER EXPANSIN 5 253 - -
Aip10g02185 253 PANTHER EXPANSIN-A15 5 253 IPR002963 GO:0009664
Aip10g02185 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Aip10g02185 253 Gene3D - 160 253 IPR036749 -
Aip10g02185 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Aip10g02185 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Aip10g02185 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Aip10g02185 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Aip10g02185 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Aip10g02185 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Aip10g02185 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Aip10g02185 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Aip10g02185 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Aip10g02185 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Aip10g02185 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Aip10g02185 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Aip10g02185 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Aip10g02185 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Aip10g02185 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Aip10g02185 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Aip10g02185 253 SMART dpbb_1 66 151 IPR007112 -
Aip10g02185 253 SUPERFAMILY Barwin-like endoglucanases 30 179 IPR036908 -
Aip10g02185 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02185 Aip-Chr10 97687434 97689343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02185 10 253 Expansin Gene Family AT2G40610 82.857 3.26e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02185 - K20628 mnt:21394504 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01249 07 19636461 19638786 Aip10g02185 10 97687434 97689343 ECH
Aip01g00270 01 2897635 2903629 Aip10g02185 10 97687434 97689343 ECH
Aip10g02185 10 97687434 97689343 Aip10g02185 10 97687434 97689343 ECH