Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02176 ATGTCCTCCGAAGACATAGGTCTCGTACCCGACCAGAGGATTGAAACCGGTCTCAGCTCCTCACTCGTTTTTCAAGACGAAACCTTGCGTTTCAGCTGCGGGGGACCGCAGCGTCGGGTCGGGGACCCGGGCCCGAAGACCCGGGAGCTTGGTGGGTTCATCGATGACAAGATGTTCTCCATGGAGCGCGACCGGTACTTCGCCGCACAGGGCTCTGAGTTCCGCCGGAGCGTCTACGGCGACTGCTCCGGCCGCCGTGATCCGCCGGGCGCACGCAATTGGAGTAGGAATGGTGGCGCCAACACTCCAAGCGGCGACGAATCCGACGGGGATGATGACGAAGATGATGACGATGACGACGATGACGACGATGACGTCGAAGGTGATGAAGGGCTTGTTGGTGTTGGTGATGGAAGCAAGCGCAATTCGAATCCAATTCTTGACATTAACGGTAGCAACGGTAGCAACGGTGGTGGCGGTGGTAGTTTGGGTGGTGTTAGTGCTGCAGAGCGGATGGCAAATGGGAAAGGACAGCATCATTCGTCTTATGTTTCTACTAGAGAAATGTTTGGGAAGGATGGTGATATGGGGCAGCTGGTGCATAACAATGCGAGTGGTACTGATGAAGATCATCATCAGAGAGAGAGATTGGGTAAATCACAGAGTGCTGTAACCATTGCTGAAACTGATTGTGATGAGTACTATTCACATTATCTTCATGGCACGGAAGGATCGGGTTCTGTGCAGAAAGTTATGGTGGATGAGAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTCTGTTTTCAAGCGAGTCAGGGGAGTCGTTGAGGGCAATTCTTTCTGATCCTGTCACAGGTGCACTTATGGACGATGCCATGATATTACCTTGTGGGCATTCATTTGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACCTGTTCTCAACCCACATCCGAGGAATCGATATCTCAAAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGGCGTGAAGAGGAGTCACAATTTTACCGGTCATCTAAAAGACGAAGAGAGAGATTTGATCAGGGTGGTTTTGGAGATTCAGCTGTTGTAGAACCACCAAGGGGGAGAGGTGTTCAATTTCCTTTTGCTGTGATGGACCGTGTTATCATAAAGGGAAACAAGAGGACACCGCAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACACAATGCCTTAATGGATGGTATGTGGTGAAGACACTGGACAATGCAGAGAGTGTGAAATTACAGTATCGGTCCCTTGCTAAGGTTTTGGATGATTCTTCAAAACCTTCCTCTACCAAGATGCCACCTAATTGGCGTTAG 1365 0.4996 MSSEDIGLVPDQRIETGLSSSLVFQDETLRFSCGGPQRRVGDPGPKTRELGGFIDDKMFSMERDRYFAAQGSEFRRSVYGDCSGRRDPPGARNWSRNGGANTPSGDESDGDDDEDDDDDDDDDDDVEGDEGLVGVGDGSKRNSNPILDINGSNGSNGGGGGSLGGVSAAERMANGKGQHHSSYVSTREMFGKDGDMGQLVHNNASGTDEDHHQRERLGKSQSAVTIAETDCDEYYSHYLHGTEGSGSVQKVMVDENGCGFSGRKDVLFSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTSEESISQNLSLRAAVQAYRREEESQFYRSSKRRRERFDQGGFGDSAVVEPPRGRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDSSKPSSTKMPPNWR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02176 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 51 453 - -
Aip10g02176 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 51 453 - -
Aip10g02176 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 345 IPR013083 -
Aip10g02176 454 MobiDBLite consensus disorder prediction 192 223 - -
Aip10g02176 454 MobiDBLite consensus disorder prediction 143 160 - -
Aip10g02176 454 SUPERFAMILY RING/U-box 274 346 - -
Aip10g02176 454 ProSiteProfiles U-box domain profile. 275 347 IPR003613 GO:0004842|GO:0016567
Aip10g02176 454 MobiDBLite consensus disorder prediction 106 131 - -
Aip10g02176 454 MobiDBLite consensus disorder prediction 78 167 - -
Aip10g02176 454 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02176 Aip-Chr10 96669929 96673488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02176 220 453 Plant U-box Gene Family AT5G05230 59.751 3.55e-87 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02176 - - adu:107470194 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02176 10 96669929 96673488 Aip10g02176 10 96669929 96673488 ECH