Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02135 ATGGAAACTCTGAAGGCTGCGATTCCCGAAGGCCTGAAGCGCATGATCGGTGATAGCACCGTCGATGATCTTCGCGCCACCTCTTCCTCCCTCCACAGCTTCTTCCATCACTTCGAGCCCTTCCACCAGTTACTCACTGAACTCGTGGATCCCAAGCATGCTCTCTGCGGCAAGAGCAAAGACGCTGCGCTCGAATCCAAGCAGCTCGGAAACCAGTGCTTCTCCAAAGGAAATTACGCCAACGCTCTTGATTTCTATACTCAGGCATTGCGAAAGGCACCTTTTGAGGATGGTGATATGGAAAATAATCTGGTTGCAACTTTGTATATCAATCGAGCTACTGTATTGCATAAAATGAGTCTTTTGACAGAGTGTTTGCGAGATTGTACTCGTGCCCTTCAGATATGTCCAAGCAATGCAAAGGCATGGTACAGAAGAGGTAAGGCAAATGCTTCCCTGGGAAATTATAAAGATGCGATGTGTGACCTAAATATGGCTAAAACTGTGGAATCATCATTGAATGGGAAGAGACAAATAGAAAGTGAGCAGAAAAATATTTTTGACCAATGCAAGAGCACAAGCACAGTAAGACAACGTAAGGAGAACACCTTGACTACAGTGGGTGAGGTTCCCCAAGTAATGCTACAGTGTGTCGCCATACCTGAGAAAGGAAGAGGCATGGTATCATCAAATGACATTTCACCTGGTTCTTTGGCTCATAGTGAAGAACCTTATGCTGTGATAATATTAAAGCAATGCCGGGAAAGTCATTGCCACTATTGCTTGAATGACCTACCTGCTGATAGGGTACCCTGTAGATCATGTTCCGTACCACTGTATTGCTCCCAGCAATGCCAGACACAGGCTGGTGGGCAAGTCTTAAGGATTTTCCCAGAAGTTCACAGCATTATTGAGAAGTTACCCAGTGACCTTGGAGAGTATGCTGACAAAGTTATTCAAGGTCATGATTCCAAATGTGAAACTGAGAATATCACTGAACATAAGCATGAATGTCATGGTGTAAATTGGTCTGCAGTACTGCCATCAGAGGTGGTTTTAACTGGCCGAATACTGGCAAGGTTTTTACTAGAGAGGACATCAGAAAATATTACGTACTTTGTGGAGAAGCTGGTAGCTCTCGTATTCAAATTTTATGTAATTTTTTGTCTGACAATGCAGGTTGTTATAATTATTTCTCAAATGAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAAAAGATGCTTGCGGACTATCCAATCAGTTTGGAGATTTTCCATCCTGTCCATACTTAACTAGTAACGTGGAACAGGTCAGGGTGGGTAAAGCTATTTATAAAGCTGGAAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTATTTCACGTAATTTGTGTATACGGACAACAAAAGCTATACCTGCTGAGGGTCATCTGGAGTTGTCTTATGGTCCACAGGTTGGGTTCTGGGATTGTAAAGATCGCCTTAATTTCCTCAAAGAGGAGTACATGTTTCAGTGCCAGTGTACTGGTTGTTCTGAAGTCAATCTATCCGACATTGTCCTCAATGCATTTTGTTGTGTCAATTCTAATTGTTTTGGTGCAGTCTTGGATAGCAGAGTAGTTAACTGTGAAAAGCAGAAAATCAAGAATTTCATGAGCCATTTAAAGATAGACAAGAATGATGACATTCATAAAGTGCTCAACCAAAATGATGCCTCCCATCATATTCAACCTGGATACTGTCTGAAGTGTGGTTCTTACCGTGATTTGGTGCCTTCACGTGCTGCAGTTGATAAAGCTTTAATATTCATAAAAAGGTTACAGGATGCAATATTATCAAAAGAAATTTTAAATACCACAATTGCAGATGCTTTGAGATCCTTACGTTTGCTAAGATCAAATTTGCATGCCTATAACAGGCTTATTGCAGAGGCAGAGGATAACCTTGCACAGGCCTTTTGTTTGTTGGGAGAATTTCAATTATGTATGGACCATTGTAAAGCATCCATCAAGATTCTAGAGAAGTTGTATCATCCTGATGATATAGTAATTGCGTATGAACTTGTGAAGCTTTGTTCGATCCAACTTTCCGTAGGAGATGGTTCTGCAATGGATAGCATAAACCGGATTGGTGATATCTTCTCATGTTATTATGGACTTCATGCTGACTTGTTTGGCAAATCAACCTCTCGTGCATTTGTAAATATGGTGTCCTTGAATATCCAGATATCCAGAGGCCAATGTGGTTGCAAGACACGATACGAATATACGATACTAGCTGTTAATGACCGACTTGGTTCCCTCTTTAAGCTATTAGCCGAACACCCACTTCACAAACGTTACAATAGAGACAACAATCTTGTATTGTATAATAAGATGAAGGATACTTTTAAGGCTAGTGTGCTTCCATTCTCGAGGCTTATTATGGGGTTGGTTGAATCGGTCAACGTCCACTTAGAGGAGGACGAGTTAAAGGCAGAGGTCCCCGAGAAGAACTAG 2514 0.4125 METLKAAIPEGLKRMIGDSTVDDLRATSSSLHSFFHHFEPFHQLLTELVDPKHALCGKSKDAALESKQLGNQCFSKGNYANALDFYTQALRKAPFEDGDMENNLVATLYINRATVLHKMSLLTECLRDCTRALQICPSNAKAWYRRGKANASLGNYKDAMCDLNMAKTVESSLNGKRQIESEQKNIFDQCKSTSTVRQRKENTLTTVGEVPQVMLQCVAIPEKGRGMVSSNDISPGSLAHSEEPYAVIILKQCRESHCHYCLNDLPADRVPCRSCSVPLYCSQQCQTQAGGQVLRIFPEVHSIIEKLPSDLGEYADKVIQGHDSKCETENITEHKHECHGVNWSAVLPSEVVLTGRILARFLLERTSENITYFVEKLVALVFKFYVIFCLTMQVVIIISQMKVNCMTVVRLKSKDACGLSNQFGDFPSCPYLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFISRNLCIRTTKAIPAEGHLELSYGPQVGFWDCKDRLNFLKEEYMFQCQCTGCSEVNLSDIVLNAFCCVNSNCFGAVLDSRVVNCEKQKIKNFMSHLKIDKNDDIHKVLNQNDASHHIQPGYCLKCGSYRDLVPSRAAVDKALIFIKRLQDAILSKEILNTTIADALRSLRLLRSNLHAYNRLIAEAEDNLAQAFCLLGEFQLCMDHCKASIKILEKLYHPDDIVIAYELVKLCSIQLSVGDGSAMDSINRIGDIFSCYYGLHADLFGKSTSRAFVNMVSLNIQISRGQCGCKTRYEYTILAVNDRLGSLFKLLAEHPLHKRYNRDNNLVLYNKMKDTFKASVLPFSRLIMGLVESVNVHLEEDELKAEVPEKN 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02135 837 Pfam SET domain 224 488 IPR001214 GO:0005515
Aip10g02135 837 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 729 - -
Aip10g02135 837 Coils Coil 633 653 - -
Aip10g02135 837 SUPERFAMILY SET domain 202 518 IPR046341 -
Aip10g02135 837 SUPERFAMILY TPR-like 63 678 IPR011990 GO:0005515
Aip10g02135 837 Gene3D Tetratricopeptide repeat domain 496 741 IPR011990 GO:0005515
Aip10g02135 837 Gene3D Tetratricopeptide repeat domain 38 203 IPR011990 GO:0005515
Aip10g02135 837 SMART tpr_5 648 681 IPR019734 GO:0005515
Aip10g02135 837 SMART tpr_5 106 139 IPR019734 GO:0005515
Aip10g02135 837 SMART tpr_5 140 173 IPR019734 GO:0005515
Aip10g02135 837 SMART tpr_5 63 96 IPR019734 GO:0005515
Aip10g02135 837 Gene3D SET domain 395 487 IPR046341 -
Aip10g02135 837 ProSiteProfiles SET domain profile. 213 488 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip10g02135 SET 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02135 K24634 - gmx:100783548 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02135 10 95041413 95050873 Aip10g02135 10 95041413 95050873 ECH