Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02117 ATGCTGCTTATCTCTTTCATCATTCAAAACCCCTTTTCTCTTCAAAGAACCCAGAAGGCCAGAACCCTAAAAGCTTCGAAGAACCCCAGTCCTCACCCCAGCACTCCGTCGTCACTCTCTCTTTTGGCACTCCCACCATCGCTGCTCCTTCGGCGGTGGTTCTCTCTGGTGGTGACTCCCTCGTCGCACACCGTCCGTCGCAAGCTTTCCGTCGCAAGTCTCTCTGGTGGTGACTTCCTCCGAGTTCACTCGGTCGACTCGGAGCAGCCTCTGGACCCTGAATCCATCTTCTCCGAGAACGATGAAGATTCGAGCCCTAAATTCAGGGGGCGAAGAGGTGTTCTCCACTTGTTCCGGAGCTCCTCTCATTCCTCAATCCCAAGCCCTAGCTCTGGCTCTTCTCTTGTCTTCATTCTCACCGTTCCCAATCACCTCTCCTTCGATGACCTCATTCGCTGGTGCGGGCCCCACCTCCACCATCTCCACCGCCTCCTCTTCATCAGGGTAGGTATAGGTGAAATAAAGAAGATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCACAGAAATGGTCTTCTCAAGAAAGCATATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGCCTTTATGAATATGCCAATAACAGATGCATTCCCTACAGATACAAGAATAATGGAACACATGACAAAGAAATAGAGGTTCTTGTGATTAGTGCTCCGAAGGGCAAAGGAATGCAGTTCCCAAAGATAGAAGTGGAATACTCACTACACTTTGCGAGCACTCCTTTCAATCCCCTTGGTGTTTTAAAGTGGACATACTTGTCTTGCCAGATTTTGGATGAATACAACCGTCTTCTAACATCTCAGTTGGAAACTCAAAGACAATATTATGAATCTTTGCTGGCAGAGGCAAAAAGCAAAGTGGACAGTTCTGTCTTTGAAGCAGTGGAGAAAGCTGTAACTTCTGGATTGCAGGACATCCAAGATAAACTGGAAAAcaacacccagccaccatctactcttcatcgccgaactcttctcctcagcgggagggtgctgtcgtcgcTCAACGTTCATCTTTGCCTCGCCCTAATTCTCGTCGTCTGCTCGTGGTTGCTCGATCCTCGTCTCCGGCGACGTTCCTCCCTCACTGTCATCTTGGCTCCTCCCTCGCCAGATCTGCTCGGAGCTACTGTTTGCATTGCCATCTCTGCCCTGGTCATCAATCCCGCCTCTGTCTTCGTCGTTGTCAGCCGCTCTGAACTTGTGTCTCTGTCATCGTGCCATCACCGCCAGAAGTGGTCTCTACAGATCGGCCCTCTTCTCGCCGTCGCCGTGCTCGGAGCTCTTCTCACCGTCGCATCTCTCTCTCTTCAAGCTCTCTGTATCTCTCCCACGGTTGCTTACTCACAGTAA 1536 0.474 MLLISFIIQNPFSLQRTQKARTLKASKNPSPHPSTPSSLSLLALPPSLLLRRWFSLVVTPSSHTVRRKLSVASLSGGDFLRVHSVDSEQPLDPESIFSENDEDSSPKFRGRRGVLHLFRSSSHSSIPSPSSGSSLVFILTVPNHLSFDDLIRWCGPHLHHLHRLLFIRVGIGEIKKMAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKHRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNRCIPYRYKNNGTHDKEIEVLVISAPKGKGMQFPKIEVEYSLHFASTPFNPLGVLKWTYLSCQILDEYNRLLTSQLETQRQYYESLLAEAKSKVDSSVFEAVEKAVTSGLQDIQDKLENNTQPPSTLHRRTLLLSGRVLSSLNVHLCLALILVVCSWLLDPRLRRRSSLTVILAPPSPDLLGATVCIAISALVINPASVFVVVSRSELVSLSSCHHRQKWSLQIGPLLAVAVLGALLTVASLSLQALCISPTVAYSQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02117 511 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 192 269 - -
Aip10g02117 511 CDD MADS_MEF2_like 197 265 IPR033896 GO:0000977|GO:0045944
Aip10g02117 511 PRINTS MADS domain signature 233 254 IPR002100 GO:0003677|GO:0046983
Aip10g02117 511 PRINTS MADS domain signature 218 233 IPR002100 GO:0003677|GO:0046983
Aip10g02117 511 PRINTS MADS domain signature 198 218 IPR002100 GO:0003677|GO:0046983
Aip10g02117 511 Pfam BRCA1-associated protein 2 129 169 IPR011422 -
Aip10g02117 511 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 205 252 IPR002100 GO:0003677|GO:0046983
Aip10g02117 511 ProSiteProfiles MADS-box domain profile. 196 256 IPR002100 GO:0003677|GO:0046983
Aip10g02117 511 SMART madsneu2 196 255 IPR002100 GO:0003677|GO:0046983
Aip10g02117 511 SUPERFAMILY SRF-like 197 259 IPR036879 GO:0003677|GO:0046983
Aip10g02117 511 Gene3D - 208 274 IPR036879 GO:0003677|GO:0046983
Aip10g02117 511 PANTHER MADS BOX PROTEIN 192 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02117 Aip-Chr10 94042583 94047948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02117 196 263 MADS-box Gene Family AT4G09960 87.143 6.06e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip10g02117 SRF-TF 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02117 K09264 - aip:107624459 675.626