Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02106 ATGACGACAGAGCAGAGAGATAGAGGTAGAGGAATACTAAGGCGTGGAATCAAAACTTCGGTAGAAGAAGATCAAGAGGAAAAAAAGAGAAAGATAGATATAGGAGCTGGTGACGTTAGAGACGACACAGACGTTATGCGAAGGAGAAGCAATAGTGGACTGAGGCACATGCGAAGGCAACCACAGTGCGAACAGCTAGTTTGTATCATTATATATGTGACCCTTGGCCGAGTGTTTCGTTCTTTTCCTCCTTTCAACTGCCAAAATATTATAACAGCAGCAGCAGCCGCTCCACCAACACAACCGTTCTTCTTCTCGTTTACGGGGGTTGAGGGAGGAACCCTAATTTGGATTGAATTAGGTGTTATGGAGAAGGAGCTAATCGAGCTCTACGATGCAGCCAAGAAGGCCGCCGATGCCGCCAGCCGCGAAGACGCCGGCCCTCACGAAGAGTCCCGATGTATCGATGCCCTCAATCAGCTCAAGAAATTCCCCGTCAATTACAAGATTCTCGTCAGCACCCAGGTTGGCAAACATCTTAAACATATAACAAAGCATCCAAGGCAGAAAATTCGGGCATTTGCTCATGACCTAATTGAGATATGGAAAGACATAATATTAACCGAAACAGGCAGAATAAAGAATGGGGGCTCTGATAACAAAGACTCGGCAAATGGTGATAGATCTAAATCTGGAAAAATGCAGAAGAGTCCTTCTGTGAAGGTTGAGAAGGTTGAAAATGGTACATCAAGGTCAATCTCAGCAAAGGTACACCATGTGGATGGCAAAATTGAAAAAAATAATGGTGCTGCGAATGTCAAGGTGGAAAAGATAGTCAAGGAAGAGATGCAAGTTTCTGGAACAAAGAAAATGTCAACAAGCTCACCTGTTACCCCAAAGCTGAAGACTATGATTAAATCTAATGATGCGATGAGAGACAAAATACGGGATCTTCTCCATGAGGCTTTATCCAAGGTTTCAGGAGAGGCTGAGGAGGATATGGTGGACGAAGTAAATGCCTGTGATCCTATTCGTGTTGCTGTGAAAGTTGAGTCTGTGCTCTTTGAAAAGTGGGGCCCTTCAAATGGTGCGCAAAAGGTCAAGTATAGGTCCCTGATGTTTAACTTGAAGGATCAAAACAACCCAGATTTTCGGAGAAAAGTTCTACTCGGCTATATTGAACCAGAACGGTTAATCAATATGAGCACGGCTGACATGGCTAGTGAGCAGAGGAAGAAAGAGAACGAGAAGATCTATGAGAAGGCATTGTTTGAATGTGAACGTGGAGGTCCACCAAAAGCTACGACAGATCAATTCAAGTGTGGGAGATGTGGTCAAAGGAAATGCACCTATTACCAAATGCAGACTCGTAGTGCTGATGAACCTATGACAACTTATGTCACTTGTACTGTCTGCAGCAACCGTTGGAAGTTCTGTTAA 1440 0.441 MTTEQRDRGRGILRRGIKTSVEEDQEEKKRKIDIGAGDVRDDTDVMRRRSNSGLRHMRRQPQCEQLVCIIIYVTLGRVFRSFPPFNCQNIITAAAAAPPTQPFFFSFTGVEGGTLIWIELGVMEKELIELYDAAKKAADAASREDAGPHEESRCIDALNQLKKFPVNYKILVSTQVGKHLKHITKHPRQKIRAFAHDLIEIWKDIILTETGRIKNGGSDNKDSANGDRSKSGKMQKSPSVKVEKVENGTSRSISAKVHHVDGKIEKNNGAANVKVEKIVKEEMQVSGTKKMSTSSPVTPKLKTMIKSNDAMRDKIRDLLHEALSKVSGEAEEDMVDEVNACDPIRVAVKVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGYIEPERLINMSTADMASEQRKKENEKIYEKALFECERGGPPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCTVCSNRWKFC 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02106 479 ProSiteProfiles Zinc finger TFIIS-type profile. 437 477 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip10g02106 479 Gene3D - 286 407 IPR036575 GO:0006351
Aip10g02106 479 MobiDBLite consensus disorder prediction 213 251 - -
Aip10g02106 479 Pfam Transcription factor S-II (TFIIS), central domain 308 425 IPR003618 GO:0006351
Aip10g02106 479 MobiDBLite consensus disorder prediction 230 251 - -
Aip10g02106 479 CDD TFIIS_I 150 206 - -
Aip10g02106 479 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 121 219 IPR035441 -
Aip10g02106 479 SUPERFAMILY Zinc beta-ribbon 420 477 - -
Aip10g02106 479 Pfam Transcription factor S-II (TFIIS) 439 477 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip10g02106 479 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 123 479 - -
Aip10g02106 479 SMART Cys4_2 439 478 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip10g02106 479 Coils Coil 124 144 - -
Aip10g02106 479 MobiDBLite consensus disorder prediction 1 32 - -
Aip10g02106 479 TIGRFAM TFSII: transcription elongation factor S-II 135 479 IPR006289 GO:0003676|GO:0005634|GO:0006368
Aip10g02106 479 Gene3D - 408 479 - -
Aip10g02106 479 ProSitePatterns Zinc finger TFIIS-type signature. 441 476 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip10g02106 479 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 123 479 - -
Aip10g02106 479 SMART TFS2_5 130 208 IPR003617 GO:0005634
Aip10g02106 479 ProSiteProfiles TFIIS N-terminal domain profile. 132 209 IPR017923 -
Aip10g02106 479 SUPERFAMILY Elongation factor TFIIS domain 2 296 409 IPR036575 GO:0006351
Aip10g02106 479 CDD Zn-ribbon_TFIIS 432 478 - -
Aip10g02106 479 Pfam TFIIS helical bundle-like domain 157 206 IPR017923 -
Aip10g02106 479 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 121 220 IPR035441 -
Aip10g02106 479 ProSiteProfiles TFIIS central domain profile. 311 434 IPR003618 GO:0006351
Aip10g02106 479 SMART mid_6 309 417 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02106 Aip-Chr10 93327103 93337099 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aip10g02106 TFIIS_M 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02106 K03145 - gmx:100811982 546.584