Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02056 ATGGGTGAGGTAGTTGTGAGCGAGAGATTAGTTGGAACGGTTGAGGAAGAAGAGAAGCAGACGACTACGGTGGCGGCTGCCGAGGAAGAAACTACTGCAACGGAGGGCAAAGGCGGAGGAGGAGAATCGAAAGGGCTGATGAGGTGGGAGAAGTTCTTGCCGAAGATGGTACTGAGGGTGCTCTTGGTTGAAGCTGATGATTCCACGAGGCAGATTATAGCTGCGCTCCTCAGAAAATGCAGCTACAAAGCAGTGGCGGCTGTTCCTGATGGCCTAAAGGCATGGGAAATACTCAAGGGAAGACCCCACAATATCGATCTAATACTGACGGAAGTGGATTTACCTGCCATATCTGGCTATGCACTTCTCACTTTAATTATGGAACATGATATTTGCAAAAATATCCCTGTCATAATGATGTCCTCACAAGATTCTATAAGTACAGTATACAAGTGTATGCTGAGGGGAGCTGCTGATTATCTTGTTAAGCCCCTTAGAAAAAATGAATTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCAATCGTCAACTGTTGCCATGAATGGCCTCCAAGATGACAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGATGCTAGTATTCGTTCAAGTGGTGATGCTGCTTCCATTCAGAGAAATAAGGAATTAATCGAGAAAGGAAGTGATGCACAGAGCTCTTGCACAAAGCCCGACCTGGAAGCTGAGAGTGGCCCTGTCGATAACATGCAGGAATTTGCTTCACTGAAATGTGGTGAATCATATCCAACTGGAACAATGACACAAGAGGTAGAAACGTGCATGCGATTGGGGCAGATATCAGTTATGCATGACAGTCATGCTGGAGGATTAGCTATGGCTAGTAGCAAAAATTGTGAGACAAGCACAACCAATGGCAAGGATGGTGATACAGAACATTTTCGGAGTGCTACTATCTGTGCCTCAAAACTCCCACAGTTAACTGCACAGGAAACTTTCAAGCGGTATACAAACAGGCAATTTCAAGCCTCACCTGCGATTTTAAACTTCTCTGACCAACAAAGGGAACAGAGAACAAATTGCGAGAAAAGTATTTCCCATTTTGCTACTGGCTGTAATTCAGATAGTTCAACACCTAGTGTGCAAAGAAATCTTTTATCTCCAACTACACCCCAATCGAAAGAATCTGAAGCAGCAACTTCACACTCGCAACAGCAAGGGCACTCTCTCCCGATTGCAGTTAAAGGTGTAAGGTTCAATGATTTATGCACGGCCTATGGTTCTGTACTTCCTCCAATGTTTCGCACGCAATCGGGTCCACCATTGGTGCCTAGCCCCAGTTCAGTTGTGCTTCTTGAACCAGCCTTTCAAGTAAATGCATTTTATCAATCAAGTGTTAAAGACAATAGTTCAGAGCAGGTTTATGAATCTCCCAGTTCTGGTGGAAAAAGTGCTCCAAACAACATGATTTCCAGACCGGAACACAAACCAGAACATGCTGAGGATCGAAGACACATCTCTCCTGCAACTGATCAAAGTGGATCCGGTAGCTTCTGTAATGGAAATGCAAGCCATCTTAATAGCATGGGGTATGGAAGCAACTGTGGAAGCAGCAACATTGTTGATCAGGTCCCAATTGGCAGAGCAGCTTCAGAGGGTAAGAATGAAGAGATGGCAAACAATGCAAGCTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAATAAGTTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGCCCGAGAGTGAAAGGTCAATTTGTTCGTCAAGTGCAGCCGGATGCTCTTGCTGCAGAGAAAGATGGCAAAGAATATGATCTTTAA 1896 0.4483 MGEVVVSERLVGTVEEEEKQTTTVAAAEEETTATEGKGGGGESKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKAVAAVPDGLKAWEILKGRPHNIDLILTEVDLPAISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTVAMNGLQDDSVAQQKVEATAENNDASIRSSGDAASIQRNKELIEKGSDAQSSCTKPDLEAESGPVDNMQEFASLKCGESYPTGTMTQEVETCMRLGQISVMHDSHAGGLAMASSKNCETSTTNGKDGDTEHFRSATICASKLPQLTAQETFKRYTNRQFQASPAILNFSDQQREQRTNCEKSISHFATGCNSDSSTPSVQRNLLSPTTPQSKESEAATSHSQQQGHSLPIAVKGVRFNDLCTAYGSVLPPMFRTQSGPPLVPSPSSVVLLEPAFQVNAFYQSSVKDNSSEQVYESPSSGGKSAPNNMISRPEHKPEHAEDRRHISPATDQSGSGSFCNGNASHLNSMGYGSNCGSSNIVDQVPIGRAASEGKNEEMANNASSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPDALAAEKDGKEYDL 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02056 631 ProSiteProfiles CCT domain profile. 572 614 IPR010402 GO:0005515
Aip10g02056 631 MobiDBLite consensus disorder prediction 469 489 - -
Aip10g02056 631 MobiDBLite consensus disorder prediction 494 510 - -
Aip10g02056 631 SUPERFAMILY CheY-like 58 186 IPR011006 -
Aip10g02056 631 PANTHER TWO-COMPONENT RESPONSE REGULATOR 334 605 IPR045279 GO:0009736
Aip10g02056 631 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 321 IPR045279 GO:0009736
Aip10g02056 631 MobiDBLite consensus disorder prediction 469 520 - -
Aip10g02056 631 MobiDBLite consensus disorder prediction 374 411 - -
Aip10g02056 631 Pfam CCT motif 572 614 IPR010402 GO:0005515
Aip10g02056 631 SMART REC_2 58 174 IPR001789 GO:0000160
Aip10g02056 631 CDD psREC_PRR 60 164 - -
Aip10g02056 631 ProSiteProfiles Response regulatory domain profile. 59 178 IPR001789 GO:0000160
Aip10g02056 631 MobiDBLite consensus disorder prediction 17 43 - -
Aip10g02056 631 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 334 605 - -
Aip10g02056 631 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 16 321 - -
Aip10g02056 631 Pfam Response regulator receiver domain 60 172 IPR001789 GO:0000160
Aip10g02056 631 Gene3D - 56 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02056 Aip-Chr10 89032858 89037517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02056 45 432 Response Regulator Gene Family AT5G24470 45.343 5.51e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Aip10g02056 Response_reg 3.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02056 K12130 - gmx:100784383 887.486