Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02040 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGTAATCTGCCCTCGGATATAAGAGAATCAGAAATAGAAGATTTATTCTACAAGTATGGCCGTATCATGGATATTGAATTGAAGATTCCACCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGAGGTCGAGATGGGTACAACTTTGATGGTTGTCGTTTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGTCGTGGCTATGGTGGTGGAGGTGGCGGTGGTGGTGGTGGTGGTGGGGGCCGTTTTGGGGTATCACGCCATTCTGAATACCGAGTTATTGTTCGTGGACTTCCCTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCCCGTGATAGCGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGATACTGAGTTTAGAAACCCTTGGGCAAGAGCTTATATTCGGGTGAGGAAGTATGAGGGTAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCTAAGAGGGATAGAAGTAGATCATTGGAGCGATCTCTGTCTAGGTCACGTTCTAGATCCAGATCCGCATCCCCAATCAAGGCTTCAAGGCCAAGATCACGATCGCGGTCTGCATCACCACACCAGGTGCTATCAGGAAGTGCTTGA 777 0.4736 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPKRDRSRSLERSLSRSRSRSRSASPIKASRPRSRSRSASPHQVLSGSA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02040 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Aip10g02040 258 Gene3D - 2 115 IPR012677 -
Aip10g02040 258 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 255 - -
Aip10g02040 258 MobiDBLite consensus disorder prediction 228 258 - -
Aip10g02040 258 CDD RRM2_SF2_plant_like 117 192 - -
Aip10g02040 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Aip10g02040 258 CDD RRM1_SF2_plant_like 8 79 - -
Aip10g02040 258 Gene3D - 116 194 IPR012677 -
Aip10g02040 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 181 IPR000504 GO:0003723
Aip10g02040 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Aip10g02040 258 SUPERFAMILY RNA-binding domain, RBD 6 187 IPR035979 GO:0003676
Aip10g02040 258 MobiDBLite consensus disorder prediction 194 227 - -
Aip10g02040 258 MobiDBLite consensus disorder prediction 81 108 - -
Aip10g02040 258 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 255 - -
Aip10g02040 258 MobiDBLite consensus disorder prediction 194 258 - -
Aip10g02040 258 SMART rrm1_1 8 78 IPR000504 GO:0003723
Aip10g02040 258 SMART rrm1_1 118 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02040 Aip-Chr10 87785647 87789917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02040 6 175 Eukaryotic Initiation Factors Gene Family AT4G34110 24.432 6.34e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02040 K12890 - gmx:100800653 365.925