Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02031 ATGTCACAGCCGAGGCAGAACAAGATGTTGATGAATCCAAACACTGCCAAACATGTAATTGGTGACACAACCTATACCAAGATCTTTGTTGGAGGCTTGGCTTGGGAAACAAAAAGAGACACTCTCAAACGTTATTTTGATCAGTTTGGAGAGATCTTAGAAGCTGTTGTCATCACTGACAGAAACTCTGGAAGATCAAAAGGATATGGCTTTGTTACATTCAAGGACCCAAATTCTGCAATAAGGGCTTGTCAGAATCCATATCCTGTGATAGATGGAAGGAGGGCTAATTGTAATCTTGCATCTCTTGGTGCACAAAAAATTGATCCATCATCTATGACAGCTACTAGACAAAAATTCAGTAGCCCTTCTTGGAATACAGCACCAATTCCAGTTCATCAAGGAACATCCACTTGTTATAATCAGCATATTCCACAGTATACATTTCCTTATCCACCCTACAGGTATCCAGGTTACCCACCCCAACAAGAAGTATATGAAATGCAGAATTACTATAATGCATATGGTGGACAACACTTTCCATTTCGTTGGTTACCAGCATATTACCAACCAATTTATGGGCTAAGTAGGCATCAATTTGTTCCAACAACAGCTTATGTGAAAAAGACACAATTCCCTGATATGTCACCTCAGGAGTTCACACCTACTGTTGCTTCATCAGAACCTATTTCAGCTTCTTCATCAATTTCTACCACTGGTTTAGTATCCAACTGTGCCATAATTTCTGTTTTATTGCACAAACCTATATACGTTGCACAAATGCTTCAATAA 792 0.3914 MSQPRQNKMLMNPNTAKHVIGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNSGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLASLGAQKIDPSSMTATRQKFSSPSWNTAPIPVHQGTSTCYNQHIPQYTFPYPPYRYPGYPPQQEVYEMQNYYNAYGGQHFPFRWLPAYYQPIYGLSRHQFVPTTAYVKKTQFPDMSPQEFTPTVASSEPISASSSISTTGLVSNCAIISVLLHKPIYVAQMLQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02031 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Aip10g02031 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Aip10g02031 263 SUPERFAMILY RNA-binding domain, RBD 3 106 IPR035979 GO:0003676
Aip10g02031 263 SMART rrm1_1 27 99 IPR000504 GO:0003723
Aip10g02031 263 PANTHER BOULE-RELATED 1 248 IPR037366 GO:0003729
Aip10g02031 263 Gene3D - 1 113 IPR012677 -
Aip10g02031 263 CDD RRM_RBM24_RBM38_like 26 101 - -
Aip10g02031 263 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02031 Aip-Chr10 87331487 87334157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02031 22 102 C2H2 Transcription Factor Family AT2G19380 43.210 1.75e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02031 - - adu:107469851 474.552